CK939497 | Citrus Genome Database

Overview


Name	CK939497
Unique Name	CK939497
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	543

Libraries


Library Name	Type
Developing fruit flavedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_AETGR (Photosystem II reaction center protein I OS=Aethionema grandiflora GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_AETCO (Photosystem II reaction center protein I OS=Aethionema cordifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_ACOCL (Photosystem II reaction center protein I OS=Acorus calamus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_ACOAM (Photosystem II reaction center protein I OS=Acorus americanus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_SILLA (Photosystem II reaction center protein I OS=Silene latifolia GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_PIPCE (Photosystem II reaction center protein I OS=Piper cenocladum GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSJ (Photosystem II reaction center protein I OS=Oryza sativa subsp. japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSI (Photosystem II reaction center protein I OS=Oryza sativa subsp. indica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSA (Photosystem II reaction center protein I OS=Oryza sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_ORYNI (Photosystem II reaction center protein I OS=Oryza nivara GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

The following BLAST results are available for this feature:

BLAST of CK939497 vs. ExPASy Swiss-Prot

BLAST of CK939497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111


Match Name	E-value	Identity	Description
PSBI_AETGR	1.403e-13	100.00	Photosystem II reaction center protein I OS=Aethio...	[more]
PSBI_AETCO	1.403e-13	100.00	Photosystem II reaction center protein I OS=Aethio...	[more]
PSBI_ACOCL	1.403e-13	100.00	Photosystem II reaction center protein I OS=Acorus...	[more]
PSBI_ACOAM	1.403e-13	100.00	Photosystem II reaction center protein I OS=Acorus...	[more]
PSBI_SILLA	3.125e-13	97.22	Photosystem II reaction center protein I OS=Silene...	[more]
PSBI_PIPCE	3.125e-13	97.22	Photosystem II reaction center protein I OS=Piper ...	[more]
PSBI_ORYSJ	3.125e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYSI	3.125e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYSA	3.125e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYNI	3.125e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004749_H08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_H08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939497 ID=CK939497; Name=CK939497; organism=Citrus sinensis; type=EST; length=543bp
GGGAACCAAAATGTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACG
ATTTTCTATTTAGAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGT
CAAAATTGGATATGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTT
TTCCCCAAAAACCTGATTTGGAGATTGTGTAATGCTTACTCTCAAACTCT
TTGTTTACACCGTAGTGATATTCTTTGTTTCGCTCTTCATCTTCGGATTC
CTGTCTAATGATCCAGGGCGTAATCCCGGACGCGAAGAATAAAAAAGGAA
GGAGTTGCTTACTTTATTCGTATAAACGTTCTTAGGATTTTTGATTCCCA
GTTACTATTAAAAATAAAGTAAAAGTGTTCGCTAAAGTTAAATTTGAAAA
ATACCAAGCCATCGCCCGAAACGGAAAGAGAGGGATTCGAACCCTCGGTA
CGAAGAACTCGTACACCGGATTAGCAATCCGACGCTTTAATCCACTTAGC
CATCTCTCCTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA