CK939497

Overview
NameCK939497
Unique NameCK939497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_GNEPA (Photosystem II reaction center protein I OS=Gnetum parvifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLK+FVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKVFVYTVVIFFVSLFLFGFLSNDPGRNPGRKE 36          
BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_PSEMZ (Photosystem II reaction center protein I OS=Pseudotsuga menziesii GN=psbI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVY VVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_PSEJA (Photosystem II reaction center protein I OS=Pseudotsuga japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVY VVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_PINTH (Photosystem II reaction center protein I OS=Pinus thunbergii GN=psbI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.645e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVY VV+FF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVVFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_PINKO (Photosystem II reaction center protein I OS=Pinus koraiensis GN=psbI PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.645e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVY VV+FF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVVFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_ZYGCR (Photosystem II reaction center protein I OS=Zygnema circumcarinatum GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTV+IFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVIIFFVSLFVFGFLSNDPSRNPGRKE 36          
BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_PSINU (Photosystem II reaction center protein I OS=Psilotum nudum GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVI F+SLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVILFISLFVFGFLSNDPGRNPGRKE 36          
BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_CUSRE (Photosystem II reaction center protein I OS=Cuscuta reflexa GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 2
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            M TLKLFVYTVVIFFVSLFIFGFLSNDP RNPGREE
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGREE 36          
BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_CUSEX (Photosystem II reaction center protein I OS=Cuscuta exaltata GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 2
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            M TLKLFVYTVVIFFVSLFIFGFLSNDP RNPGREE
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGREE 36          
BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_CHAGL (Photosystem II reaction center protein I OS=Chaetosphaeridium globosum GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLK+FVYTVVIFFVSLFIFGFLSNDP RNPGR+E
Sbjct:    1 MLTLKIFVYTVVIFFVSLFIFGFLSNDPARNPGRKE 36          
The following BLAST results are available for this feature:
BLAST of CK939497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBI_GNEPA1.551e-1291.67Photosystem II reaction center protein I OS=Gnetum... [more]
PSBI_PSEMZ2.025e-1291.67Photosystem II reaction center protein I OS=Pseudo... [more]
PSBI_PSEJA2.025e-1291.67Photosystem II reaction center protein I OS=Pseudo... [more]
PSBI_PINTH2.645e-1288.89Photosystem II reaction center protein I OS=Pinus ... [more]
PSBI_PINKO2.645e-1288.89Photosystem II reaction center protein I OS=Pinus ... [more]
PSBI_ZYGCR3.455e-1288.89Photosystem II reaction center protein I OS=Zygnem... [more]
PSBI_PSINU3.455e-1288.89Photosystem II reaction center protein I OS=Psilot... [more]
PSBI_CUSRE3.455e-1294.44Photosystem II reaction center protein I OS=Cuscut... [more]
PSBI_CUSEX3.455e-1294.44Photosystem II reaction center protein I OS=Cuscut... [more]
PSBI_CHAGL3.455e-1291.67Photosystem II reaction center protein I OS=Chaeto... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_H08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939497 ID=CK939497; Name=CK939497; organism=Citrus sinensis; type=EST; length=543bp
GGGAACCAAAATGTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACG
ATTTTCTATTTAGAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGT
CAAAATTGGATATGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTT
TTCCCCAAAAACCTGATTTGGAGATTGTGTAATGCTTACTCTCAAACTCT
TTGTTTACACCGTAGTGATATTCTTTGTTTCGCTCTTCATCTTCGGATTC
CTGTCTAATGATCCAGGGCGTAATCCCGGACGCGAAGAATAAAAAAGGAA
GGAGTTGCTTACTTTATTCGTATAAACGTTCTTAGGATTTTTGATTCCCA
GTTACTATTAAAAATAAAGTAAAAGTGTTCGCTAAAGTTAAATTTGAAAA
ATACCAAGCCATCGCCCGAAACGGAAAGAGAGGGATTCGAACCCTCGGTA
CGAAGAACTCGTACACCGGATTAGCAATCCGACGCTTTAATCCACTTAGC
CATCTCTCCTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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