CN188202

Overview
NameCN188202
Unique NameCN188202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.017e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 134.42 bits (337), Expect = 5.204e-31
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = -1 
Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVKAKIQ KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.563e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 133.265 bits (334), Expect = 1.159e-30
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = -1 
Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVKAKIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.042e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 134.806 bits (338), Expect = 3.985e-31
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = -1 
Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVKAKIQ KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.483e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -1 
Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVK+KIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.483e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -1 
Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVK+KIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.483e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -1 
Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVK+KIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.483e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -1 
Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVK+KIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.483e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -1 
Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVK+KIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.549e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -1 
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 134.42 bits (337), Expect = 5.204e-31
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = -1 
Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVKAK+Q KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.941e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -1 
Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = -1 
Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVK KIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CN188202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBIQ_ARATH7.017e-36100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_COPCO1.563e-3598.68Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHLRE2.042e-3598.68Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_YEAST3.483e-3597.37Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO3.483e-3597.37Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA3.483e-3597.37Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE3.483e-3597.37Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL3.483e-3597.37Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBL1_ORYSJ4.549e-3597.37Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_NEUCR5.941e-3597.37Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188202 ID=CN188202; Name=CN188202; organism=Citrus sinensis; type=EST; length=673bp
GAGGTTTAAGTACTGCACATTAAACATGTATTTATTCAAGAAAAAGATTC
TTAGATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAGAAAC
AGAGTTCAACTACCACAACCAAAATAAACTTCAAATAGTTATTTAAGCCA
TTTCACCAATAGCAAGCAAACATTAACCAAGACAAACCGAAGCAAATAAG
ACACACACACACCCAGATGACCAAACTCAGAAACCTCCACGGAGACGGAG
CACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCC
TTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGG
GGAATCCCCTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATTGTGTC
CGAACTCTCAACCTCCAATGTGATGGTTTTCCCAGTGAGTGTCTTCACAA
AAATCTGCATACCACCACGGAGGCGAAGAACCAAGTGAAGAGTGGATTCT
TTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCAAGCTGCTTTCC
AGCAAAAATGAGCCTCTGCTGATCTGGAGGGATACCCTCCTTGACTTGAA
TTTTTGCTTTCACGTTGACGATGGTGTCAGAACTTTCGACCTCAAGAGTA
ATTGTTTTTCCGGTGAGGGTTTT
back to top