CN188202 | Citrus Genome Database

Overview


Name	CN188202
Unique Name	CN188202
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	673

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CN188202_ssr201	microsatellite	CN188202_ssr201:201..212.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9569	contig	Csv1_Contig9569:987..1659.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.941e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 133.265 bits (334), Expect = 1.159e-30
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDT+ NVK+KIQ KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.759e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 132.88 bits (333), Expect = 1.514e-30
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTI LEVESSDTI NVKAKIQ KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.759e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 132.88 bits (333), Expect = 1.514e-30
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVK KIQ KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.013e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 132.494 bits (332), Expect = 1.978e-30
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVE+SDTI NVKAKIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.013e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 132.494 bits (332), Expect = 1.978e-30
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVE+SDTI NVKAKIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.323e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 130.183 bits (326), Expect = 9.815e-30
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITL+VE SDTI NVK KIQ KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.323e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVESSDTI NVK KIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.728e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 131.724 bits (330), Expect = 3.373e-30
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVE SDTI NVKAKIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.728e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 131.724 bits (330), Expect = 3.373e-30
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVE SDTI NVKAKIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.728e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 131.724 bits (330), Expect = 3.373e-30
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTITLEVE SDTI NVKAKIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CN188202 vs. ExPASy Swiss-Prot

BLAST of CN188202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
UBIQ_ACECL	5.941e-35	96.05	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_TRYCR	7.759e-35	97.37	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_ACACA	7.759e-35	97.37	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_GEOCY	1.013e-34	96.05	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CAEEL	1.013e-34	96.05	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]
UBIQ_EUPEU	1.323e-34	96.05	Ubiquitin OS=Euplotes eurystomus PE=3 SV=1	[more]
UBIQ_AGLNE	1.323e-34	96.05	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_XENLA	1.728e-34	96.05	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_SPOFR	1.728e-34	96.05	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_RAT	1.728e-34	96.05	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0005K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K14, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188202 ID=CN188202; Name=CN188202; organism=Citrus sinensis; type=EST; length=673bp
GAGGTTTAAGTACTGCACATTAAACATGTATTTATTCAAGAAAAAGATTC
TTAGATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAGAAAC
AGAGTTCAACTACCACAACCAAAATAAACTTCAAATAGTTATTTAAGCCA
TTTCACCAATAGCAAGCAAACATTAACCAAGACAAACCGAAGCAAATAAG
ACACACACACACCCAGATGACCAAACTCAGAAACCTCCACGGAGACGGAG
CACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCC
TTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGG
GGAATCCCCTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATTGTGTC
CGAACTCTCAACCTCCAATGTGATGGTTTTCCCAGTGAGTGTCTTCACAA
AAATCTGCATACCACCACGGAGGCGAAGAACCAAGTGAAGAGTGGATTCT
TTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCAAGCTGCTTTCC
AGCAAAAATGAGCCTCTGCTGATCTGGAGGGATACCCTCCTTGACTTGAA
TTTTTGCTTTCACGTTGACGATGGTGTCAGAACTTTCGACCTCAAGAGTA
ATTGTTTTTCCGGTGAGGGTTTT