CN188202 | Citrus Genome Database

Overview


Name	CN188202
Unique Name	CN188202
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	673

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.911e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 3.730e-29
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTI LEVE SDTI NVKAKIQ KEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.148e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 123.25 bits (308), Expect = 1.200e-27
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTG TI LEVE SDTI NVKAKIQ KEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.157e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = -1

Query:  233 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 460
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 111.694 bits (278), Expect = 3.612e-24
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTIT+E E  DT+  VK KI  KEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    6 KTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.186e-28
Identity = 58/77 (75.32%), Postives = 69/77 (89.61%), Query Frame = -1

Query:  230 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 460
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG+
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGGY 77

HSP 2 Score: 110.923 bits (276), Expect = 6.162e-24
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGKTIT E E ++T+ ++K KI  KEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    6 KTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = -1

Query:  239 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 427
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 2 Score: 115.546 bits (288), Expect = 2.502e-25
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = -1

Query:  467 TITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 655
            TITLEVE SDTI NVKAKIQ KEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.882e-21
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = -1

Query:  230 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 454
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGGF
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 77

HSP 2 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGK I +++E +DTI  +K +++ KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.328e-21
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = -1

Query:  230 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 454
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77

HSP 2 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGK I +++E +DTI  VK +++ KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.088e-20
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = -1

Query:  230 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 454
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77

HSP 2 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGK I +++E +DTI  +K +++ KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.855e-20
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = -1

Query:  230 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 460
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGGF
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGGF 77

HSP 2 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGK I L++E +D +  +K K++ KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    6 KTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

[Close]

BLAST of CN188202 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.423e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -1

Query:  233 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 454
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = -1

Query:  461 KTLTGKTITLEVESSDTIVNVKAKIQVKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 673
            KTLTGK I +++E +DTI  +K +++ KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

The following BLAST results are available for this feature:

BLAST of CN188202 vs. ExPASy Swiss-Prot

BLAST of CN188202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
UBIQ_LEIMA	1.911e-33	93.42	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	6.148e-32	90.79	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIL_NPVOP	3.157e-28	80.26	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	9.186e-28	75.32	Ubiquitin-like protein OS=Autographa californica n...	[more]
UBIQ_LUMTE	7.777e-27	95.24	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
RUB1_ARATH	4.882e-21	64.00	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]
RUB1_DESAN	8.328e-21	64.00	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
RUB1_ORYSJ	1.088e-20	62.67	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
NEDD8_CAEEL	1.855e-20	61.04	NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1	[more]
RUB2_ORYSJ	2.423e-20	63.51	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0005K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K14, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188202 ID=CN188202; Name=CN188202; organism=Citrus sinensis; type=EST; length=673bp
GAGGTTTAAGTACTGCACATTAAACATGTATTTATTCAAGAAAAAGATTC
TTAGATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAGAAAC
AGAGTTCAACTACCACAACCAAAATAAACTTCAAATAGTTATTTAAGCCA
TTTCACCAATAGCAAGCAAACATTAACCAAGACAAACCGAAGCAAATAAG
ACACACACACACCCAGATGACCAAACTCAGAAACCTCCACGGAGACGGAG
CACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCC
TTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGG
GGAATCCCCTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATTGTGTC
CGAACTCTCAACCTCCAATGTGATGGTTTTCCCAGTGAGTGTCTTCACAA
AAATCTGCATACCACCACGGAGGCGAAGAACCAAGTGAAGAGTGGATTCT
TTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCAAGCTGCTTTCC
AGCAAAAATGAGCCTCTGCTGATCTGGAGGGATACCCTCCTTGACTTGAA
TTTTTGCTTTCACGTTGACGATGGTGTCAGAACTTTCGACCTCAAGAGTA
ATTGTTTTTCCGGTGAGGGTTTT