CN188196 | Citrus Genome Database

Overview


Name	CN188196
Unique Name	CN188196
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	673

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN188196 vs. ExPASy Swiss-Prot
Match: CATA_STAAM (Catalase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=katA PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.614e-34
Identity = 74/155 (47.74%), Postives = 103/155 (66.45%), Query Frame = 2

Query:  218 GPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHI---QENWRIVDFFSHHPESLHMFSFL 673
            GP+L++D + +E+++ FDRE IPER +HA+G+ A G F VT D++  T A      G QT +  RFSTV  ERG+ +  RD RGFA+KFYT EGN+DLVGNN PVFF RD   F  +  A+K +P++++   Q NW   DF++  PE+LH  + L
Sbjct:   29 GPLLMQDIYFLEQMSQFDREVIPERRMHAKGSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNW---DFWTGLPEALHQVTIL 180

HSP 2 Score: 21.9422 bits (45), Expect = 7.614e-34
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3

Query:  153 GAPVWNNNSSMTIGPR 200
            G PV +  +SMT GPR
Sbjct:   13 GHPVSDRENSMTAGPR 28

BLAST of CN188196 vs. ExPASy Swiss-Prot
Match: CATA_STAAC (Catalase OS=Staphylococcus aureus (strain COL) GN=katA PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.614e-34
Identity = 74/155 (47.74%), Postives = 103/155 (66.45%), Query Frame = 2

Query:  218 GPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHI---QENWRIVDFFSHHPESLHMFSFL 673
            GP+L++D + +E+++ FDRE IPER +HA+G+ A G F VT D++  T A      G QT +  RFSTV  ERG+ +  RD RGFA+KFYT EGN+DLVGNN PVFF RD   F  +  A+K +P++++   Q NW   DF++  PE+LH  + L
Sbjct:   29 GPLLMQDIYFLEQMSQFDREVIPERRMHAKGSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNW---DFWTGLPEALHQVTIL 180

HSP 2 Score: 21.9422 bits (45), Expect = 7.614e-34
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3

Query:  153 GAPVWNNNSSMTIGPR 200
            G PV +  +SMT GPR
Sbjct:   13 GHPVSDRENSMTAGPR 28

BLAST of CN188196 vs. ExPASy Swiss-Prot
Match: CATA_STAAB (Catalase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=katA PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.614e-34
Identity = 74/155 (47.74%), Postives = 103/155 (66.45%), Query Frame = 2

Query:  218 GPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHI---QENWRIVDFFSHHPESLHMFSFL 673
            GP+L++D + +E+++ FDRE IPER +HA+G+ A G F VT D++  T A      G QT +  RFSTV  ERG+ +  RD RGFA+KFYT EGN+DLVGNN PVFF RD   F  +  A+K +P++++   Q NW   DF++  PE+LH  + L
Sbjct:   29 GPLLMQDIYFLEQMSQFDREVIPERRMHAKGSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNW---DFWTGLPEALHQVTIL 180

HSP 2 Score: 21.9422 bits (45), Expect = 7.614e-34
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3

Query:  153 GAPVWNNNSSMTIGPR 200
            G PV +  +SMT GPR
Sbjct:   13 GHPVSDRENSMTAGPR 28

BLAST of CN188196 vs. ExPASy Swiss-Prot
Match: CATA_STAA8 (Catalase OS=Staphylococcus aureus (strain NCTC 8325) GN=katA PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.614e-34
Identity = 74/155 (47.74%), Postives = 103/155 (66.45%), Query Frame = 2

Query:  218 GPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHI---QENWRIVDFFSHHPESLHMFSFL 673
            GP+L++D + +E+++ FDRE IPER +HA+G+ A G F VT D++  T A      G QT +  RFSTV  ERG+ +  RD RGFA+KFYT EGN+DLVGNN PVFF RD   F  +  A+K +P++++   Q NW   DF++  PE+LH  + L
Sbjct:   29 GPLLMQDIYFLEQMSQFDREVIPERRMHAKGSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNW---DFWTGLPEALHQVTIL 180

HSP 2 Score: 21.9422 bits (45), Expect = 7.614e-34
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3

Query:  153 GAPVWNNNSSMTIGPR 200
            G PV +  +SMT GPR
Sbjct:   13 GHPVSDRENSMTAGPR 28

BLAST of CN188196 vs. ExPASy Swiss-Prot
Match: CATA_STAA3 (Catalase OS=Staphylococcus aureus (strain USA300) GN=katA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.614e-34
Identity = 74/155 (47.74%), Postives = 103/155 (66.45%), Query Frame = 2

Query:  218 GPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHI---QENWRIVDFFSHHPESLHMFSFL 673
            GP+L++D + +E+++ FDRE IPER +HA+G+ A G F VT D++  T A      G QT +  RFSTV  ERG+ +  RD RGFA+KFYT EGN+DLVGNN PVFF RD   F  +  A+K +P++++   Q NW   DF++  PE+LH  + L
Sbjct:   29 GPLLMQDIYFLEQMSQFDREVIPERRMHAKGSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNW---DFWTGLPEALHQVTIL 180

HSP 2 Score: 21.9422 bits (45), Expect = 7.614e-34
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3

Query:  153 GAPVWNNNSSMTIGPR 200
            G PV +  +SMT GPR
Sbjct:   13 GHPVSDRENSMTAGPR 28

BLAST of CN188196 vs. ExPASy Swiss-Prot
Match: CATA_STAES (Catalase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=katA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.911e-33
Identity = 73/155 (47.10%), Postives = 105/155 (67.74%), Query Frame = 2

Query:  218 GPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHI---QENWRIVDFFSHHPESLHMFSFL 673
            GP+L++D + +E++++FDRE IPER +HA+G+ A G F VT+D++  T A      G QT +  RFSTV  ERG+ +  RD RGFA+KFYT +GN+DLVGNN PVFF RD   F  +  A+K +P++++   Q NW   DF++  PE+LH  + L
Sbjct:   29 GPLLMQDVYYLEQISHFDREVIPERRMHAKGSGAFGTFTVTNDITQYTNAKIFSEVGKQTEMFARFSTVSGERGAADLERDIRGFALKFYTEDGNWDLVGNNTPVFFFRDPKLFISLNRAVKRDPRTNMRSAQNNW---DFWTGLPEALHQVTIL 180

BLAST of CN188196 vs. ExPASy Swiss-Prot
Match: CATA_STAEQ (Catalase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=katA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.911e-33
Identity = 73/155 (47.10%), Postives = 105/155 (67.74%), Query Frame = 2

Query:  218 GPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHI---QENWRIVDFFSHHPESLHMFSFL 673
            GP+L++D + +E++++FDRE IPER +HA+G+ A G F VT+D++  T A      G QT +  RFSTV  ERG+ +  RD RGFA+KFYT +GN+DLVGNN PVFF RD   F  +  A+K +P++++   Q NW   DF++  PE+LH  + L
Sbjct:   29 GPLLMQDVYYLEQISHFDREVIPERRMHAKGSGAFGTFTVTNDITQYTNAKIFSEVGKQTEMFARFSTVSGERGAADLERDIRGFALKFYTEDGNWDLVGNNTPVFFFRDPKLFISLNRAVKRDPRTNMRSAQNNW---DFWTGLPEALHQVTIL 180

BLAST of CN188196 vs. ExPASy Swiss-Prot
Match: CATA_STAEP (Catalase OS=Staphylococcus epidermidis GN=katA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.911e-33
Identity = 73/155 (47.10%), Postives = 105/155 (67.74%), Query Frame = 2

Query:  218 GPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHI---QENWRIVDFFSHHPESLHMFSFL 673
            GP+L++D + +E++++FDRE IPER +HA+G+ A G F VT+D++  T A      G QT +  RFSTV  ERG+ +  RD RGFA+KFYT +GN+DLVGNN PVFF RD   F  +  A+K +P++++   Q NW   DF++  PE+LH  + L
Sbjct:   29 GPLLMQDVYYLEQISHFDREVIPERRMHAKGSGAFGTFTVTNDITQYTNAKIFSEVGKQTEMFARFSTVSGERGAADLERDIRGFALKFYTEDGNWDLVGNNTPVFFFRDPKLFISLNRAVKRDPRTNMRSAQNNW---DFWTGLPEALHQVTIL 180

BLAST of CN188196 vs. ExPASy Swiss-Prot
Match: CATB_STAAA (Catalase-like protein OS=Staphylococcus aureus subsp. anaerobius GN=katB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.721e-33
Identity = 73/155 (47.10%), Postives = 102/155 (65.81%), Query Frame = 2

Query:  218 GPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHI---QENWRIVDFFSHHPESLHMFSFL 673
            GP+L++D + +E+++ FDRE IPER +HA+G+ A G F VT D++  T A      G QT +  RFSTV  ERG+ +   D RGFA+KFYT EGN+DLVGNN PVFF RD   F  +  A+K +P++++   Q NW   DF++  PE+LH  + L
Sbjct:   29 GPLLMQDIYFLEQMSQFDREVIPERRMHAKGSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAESDIRGFALKFYTEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNW---DFWTGLPEALHQVTIL 180

HSP 2 Score: 21.9422 bits (45), Expect = 3.721e-33
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3

Query:  153 GAPVWNNNSSMTIGPR 200
            G PV +  +SMT GPR
Sbjct:   13 GHPVSDRENSMTAGPR 28

BLAST of CN188196 vs. ExPASy Swiss-Prot
Match: CAT1_PENJA (Catalase OS=Penicillium janthinellum PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.789e-31
Identity = 77/152 (50.66%), Postives = 93/152 (61.18%), Query Frame = 2

Query:  218 GPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDM--VHALKPNPKSHI----QENWRIVDFFSHHPESL 655
            G  LL+D    E +  FDRER+PER VHARG  A G F    D SNLT A FL A G  TP + RFSTV   RGS +T RD  GFA +FY  EGNFD+VGNN PVFF+ D +  P +  +HA KPNP+ H+    Q+  RI D  +   +SL
Sbjct:   37 GATLLQDLLFTEIIFAFDRERVPERAVHARGTGAHGTFLSYEDWSNLTAASFLSAEGKFTPEMTRFSTVSGARGSADTARDVHGFATRFYVDEGNFDIVGNNIPVFFIWDVIIEPTLMALHAQKPNPRFHLPRGQQDPNRISDNLTARGDSL 188

The following BLAST results are available for this feature:

BLAST of CN188196 vs. ExPASy Swiss-Prot

BLAST of CN188196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141


Match Name	E-value	Identity	Description
CATA_STAAM	7.614e-34	47.74	Catalase OS=Staphylococcus aureus (strain Mu50 / A...	[more]
CATA_STAAC	7.614e-34	47.74	Catalase OS=Staphylococcus aureus (strain COL) GN=...	[more]
CATA_STAAB	7.614e-34	47.74	Catalase OS=Staphylococcus aureus (strain bovine R...	[more]
CATA_STAA8	7.614e-34	47.74	Catalase OS=Staphylococcus aureus (strain NCTC 832...	[more]
CATA_STAA3	7.614e-34	47.74	Catalase OS=Staphylococcus aureus (strain USA300) ...	[more]
CATA_STAES	1.911e-33	47.10	Catalase OS=Staphylococcus epidermidis (strain ATC...	[more]
CATA_STAEQ	1.911e-33	47.10	Catalase OS=Staphylococcus epidermidis (strain ATC...	[more]
CATA_STAEP	1.911e-33	47.10	Catalase OS=Staphylococcus epidermidis GN=katA PE=...	[more]
CATB_STAAA	3.721e-33	47.10	Catalase-like protein OS=Staphylococcus aureus sub...	[more]
CAT1_PENJA	1.789e-31	50.66	Catalase OS=Penicillium janthinellum PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0005K11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188196 ID=CN188196; Name=CN188196; organism=Citrus sinensis; type=EST; length=673bp
GAGGACACAATCCCCATTTGTCTACTCTCTCTTTTTCTTTCTCGTAGTGT
AGCTTCTCGTTCAATCTTTTTTTCTGCTTCCCTCCCGCTATGGATCCATA
CAAGTTCCGCCCTGCCAGTTCTTTCAACGCCCCCTTCTTTACCACCAATT
CCGGCGCTCCGGTATGGAACAACAACTCATCAATGACGATTGGACCTAGA
GTTGCTTCAATTTGACAGGTCCAATCCTCCTTGAGGATTATCATCTAGTG
GAGAAACTTGCAAATTTTGATAGGGAGCGGATTCCAGAACGTGTTGTCCA
TGCCAGGGGAGCCAGTGCTAAGGGTTTCTTTGAGGTCACCCATGATGTTT
CTAACCTTACTTGTGCTGATTTCCTTCGAGCCCCAGGGGTTCAGACGCCT
GTCATTGTCCGCTTCTCCACTGTTATCCATGAGCGTGGCAGCCCTGAAAC
CCTGAGAGATCCTCGAGGATTTGCGGTCAAGTTTTACACCAGAGAGGGTA
ATTTTGATCTTGTGGGAAACAATTTCCCCGTCTTTTTTGTCCGTGATGGA
ATGAAATTCCCTGACATGGTCCATGCGCTTAAACCTAACCCAAAGTCTCA
CATCCAAGAGAACTGGAGGATTGTTGACTTCTTCTCCCATCATCCTGAAA
GCTTGCACATGTTCTCCTTCTTG