CK939438

Overview
NameCK939438
Unique NameCK939438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 83/263 (31.56%), Postives = 128/263 (48.67%), Query Frame = 1
Query:   82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLV 858
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    G+VTAG +S +SDGA+A++++
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKEIYGIEGHDANGALIKVLQDEVIRPETTMESLAALRPVFDPVNGTVTAGTSSALSDGASAMLIM 251          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 83/263 (31.56%), Postives = 128/263 (48.67%), Query Frame = 1
Query:   82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLV 858
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    G+VTAG +S +SDGA+A++++
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIEGHDANGALIKVLQDEVIRPETTMESLAALRPVFDPVNGTVTAGTSSALSDGASAMLIM 251          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 83/263 (31.56%), Postives = 128/263 (48.67%), Query Frame = 1
Query:   82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLV 858
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    G+VTAG +S +SDGA+A++++
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIEGHDANGALIKVLQDEVIRPETTMESLAALRPVFDPVNGTVTAGTSSALSDGASAMLIM 251          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 87/260 (33.46%), Postives = 130/260 (50.00%), Query Frame = 1
Query:   94 IVGVARTPMGGFLGSL-SSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFK-EGGSVTAGNASIISDGAAALVLVS 861
            IV   RTPMG   G +  +  A  L +  ++  L R   V P  + ++++G V      G   AR AAL AGIP+SV   T+N++C S M+A+  AA++I  G  D  + GG+E M + P           + H       L   +        MG+ AE  A  H I+R++QD +A RS +R  AA   G F  EI  +E  +  G   ++ D +    +     L KLRP F    G+VTAG +S +SDGA+A++++S
Sbjct:    6 IVDCIRTPMGRSKGGVFKNKRAEDLSAHLMKGLLDRNPAVDPASIDDIYWGCVQQTLEQGFNVARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGAGDTYLIGGVEHMGHVP-----------MTHGNDFHPGLATSIAQAAG--SMGLTAEYLATLHGISREQQDEFAYRSHQRAQAATVEGRFRREILAMEGHAADGSLILVEDDEVIRPETTVEGLSKLRPVFNPASGTVTAGTSSALSDGASAMLVMS 252          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_ERWT9 (3-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fadA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 93/266 (34.96%), Postives = 136/266 (51.13%), Query Frame = 1
Query:   88 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSII--VDKDEGLE-KFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLVSG 864
            V IV   RTPMG   G +   V A  L +  +   L R  +V P  + ++++G V      G   AR AAL A IP+SV  TT+N++C S M+A+  AA++I +G     + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD +A RS +R  AA  +G FA EI  V    G     ++   D DE +  +     LM LRP+F    G+VTAG++S +SDGAAA++++SG
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRHVRAEDLSAHLMRSLLSRNPSVDPATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPATTVNRLCGSSMQALHDAARAIMVGDARTCLIGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDRFAARSHQRAAAATQAGHFAAEIVAV---CGHDADGVLKRYDADEVIRPETTVESLMALRPAFDPVDGTVTAGSSSALSDGAAAMLIMSG 253          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 86/269 (31.97%), Postives = 136/269 (50.56%), Query Frame = 1
Query:   70 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAK-LMKLRPSF-KEGGSVTAGNASIISDGAAALVLVS 861
            S+  +DV IV   RTPMG    G    V A KL +  I+  + R  N    L ++V +G V  +   G   AR  ++ AG+P +    T+N++C S M+A+  A+QSI  G  D+ V GG+E M +             + H   ++  +        N   MG+ AE+    H ITR++QD++ +RS K    A   G +  EI P+E     G   ++ + DE +    + + + KLRP F    G+VTAG +S +SDGA+A++++S
Sbjct:    2 SLNPKDVVIVDAVRTPMGKSRNGQFRHVRAEKLSAQLIQALMARNPNWDIQLTEDVIWGCVNQTKEQGMNIARNISMLAGLPRTSAAQTVNRLCGSSMQALHSASQSIMTGNGDVFVIGGVEHMGHV-----------AMDHGIDLNPEMSKVTAKASN--MMGLTAEMLGKMHGITREQQDAFGVRSHKLAWEATQQGRWDNEIVPIEGHDQNGH-KVLCEIDEVIRPGASIEDMQKLRPVFDPANGTVTAGTSSALSDGASAMLVMS 256          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24
Identity = 83/263 (31.56%), Postives = 127/263 (48.29%), Query Frame = 1
Query:   82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLV 858
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P                   GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    G+VTAG +S +SDGA+A++++
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANKVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIEGHDANGALIKVLQDEVIRPETTMESLAALRPVFDPVNGTVTAGTSSALSDGASAMLIM 251          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24
Identity = 82/264 (31.06%), Postives = 135/264 (51.14%), Query Frame = 1
Query:   82 RDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVLVS 861
            ++V IV   RTPMG    G      A  L +  ++  L+R  NV P  ++++++G V      G   AR A+L AG+P S+  TT+N++C S M+A+  A+++I +G  DI + GG+E M + P             +     GM             MG+ AE+    H I+R++QD++A  S ++   A   G F  EI P+E     G  +++   +    +     L  LRP+F    G+VTAG++S +SDGA+A++++S
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHMGHVPMNHGVDFHSGLSKNVAKASGM-------------MGLTAEMLGKMHGISREQQDAFAFASHQKAHRATIEGHFDSEILPMEGHDENGALTLVKHDEVIRPETTLEGLAALRPAFDPANGTVTAGSSSALSDGASAMLIMS 252          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24
Identity = 91/275 (33.09%), Postives = 135/275 (49.09%), Query Frame = 1
Query:   76 KARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPL-----LVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL-------AEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEG-LEKFDAAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVL 855
            +  DV IV   R+ +G GF G+   V+   L    +   + R   +PL     L++EV  GNVL+   G    R A L +GIP S     +N+ CSSG+ AV   A  I++G  DI +A G+ESM+N  K +       +E  + +R     ++                MG+  E  A    I+R +QD +A  S+++   A+N GLF  EI P+++  G      I   DEG      A  L  +RP+F K+ G+ TAGNAS +SDG A ++L
Sbjct:   32 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFP-EPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIP---------------MGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS-----ICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLL 285          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24
Identity = 88/272 (32.35%), Postives = 139/272 (51.10%), Query Frame = 1
Query:   70 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFG---MGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLE-KFDAAKLMKLRPSFK-EGGSVTAGNASIISDGAAALVLVS 861
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R A V P  V++V +G V  +   G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M                GH +++ G+  +    +Y       MG+ AE+    H ITR++QD++ +RS +    A   G F  EI P++     G   +  D DE +  +     L  L+P+F  +GG+VTAG +S I+DGA+ ++++S
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNAKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKLF-DYDETIRPETTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMS 256          
The following BLAST results are available for this feature:
BLAST of CK939438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268
Match NameE-valueIdentityDescription
FADA_SHESW3.240e-2431.563-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHEPC3.240e-2431.563-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]
FADA_SHEB83.240e-2431.563-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_PSEHT3.240e-2433.463-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
FADA_ERWT93.240e-2434.963-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (s... [more]
FADA_ALCBS3.240e-2431.973-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
FADA_SHEB55.527e-2431.563-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_ALISL5.527e-2431.063-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
THIK_YEAST7.219e-2433.093-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
FADA_PSEF57.219e-2432.353-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_E09 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939438 ID=CK939438; Name=CK939438; organism=Citrus sinensis; type=EST; length=866bp
GCGGGGAAGTTTAAAGTTAAAGATTCTTTGANNNTACTATTTAGCATGGT
GCCTTTAGAACCTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGG
GTGTTGCACGTACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTT
TCAGCTACAAAGCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGC
CAACGTGAAACCACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTCTTA
GCGCCAATTTAGGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGG
ATTCCTAATTCTGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGG
GATGAAAGCTGTAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATG
ATATTGTTGTTGCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTAT
CTAGCAGAAGCAAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGA
TGGCATGCTCAAAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGG
GAGTATGTGCAGAAATATGTGCTAATAAACATACCATAACAAGGGATGAG
CAGGATTCATATGCTATTAGAAGCTTTAAGCGTGGGATTGCTGCACAAAA
TTCTGGTCTCTTTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAA
GAGGGAAACCATCCATAATTGTTGATAAGGATGAAGGTTTAGAAAAGTTT
GATGCTGCAAAGCTAATGAAGCTCAGACCCAGTTTTAAGGAAGGGGGTTC
TGTTACTGCTGGCAATGCTTCTATTATAAGTGATGGTGCAGCGGCACTTG
TACTGGTGAGTGGAGT
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