CK939438
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24 Identity = 83/263 (31.56%), Postives = 128/263 (48.67%), Query Frame = 1 Query: 82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLV 858 + IV RTPMG G +V A L + ++ L+ + P L+++V +G V G AR A+L AGIP + T+N++C S M A+ AA++I G+ D + GG+E M + P + GM MG+ AE+ H ITR++QD++A+RS +R AA G FA EI +E G ++ + + L LRP F G+VTAG +S +SDGA+A++++ Sbjct: 2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKEIYGIEGHDANGALIKVLQDEVIRPETTMESLAALRPVFDPVNGTVTAGTSSALSDGASAMLIM 251
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24 Identity = 83/263 (31.56%), Postives = 128/263 (48.67%), Query Frame = 1 Query: 82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLV 858 + IV RTPMG G +V A L + ++ L+ + P L+++V +G V G AR A+L AGIP + T+N++C S M A+ AA++I G+ D + GG+E M + P + GM MG+ AE+ H ITR++QD++A+RS +R AA G FA EI +E G ++ + + L LRP F G+VTAG +S +SDGA+A++++ Sbjct: 2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIEGHDANGALIKVLQDEVIRPETTMESLAALRPVFDPVNGTVTAGTSSALSDGASAMLIM 251
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24 Identity = 83/263 (31.56%), Postives = 128/263 (48.67%), Query Frame = 1 Query: 82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLV 858 + IV RTPMG G +V A L + ++ L+ + P L+++V +G V G AR A+L AGIP + T+N++C S M A+ AA++I G+ D + GG+E M + P + GM MG+ AE+ H ITR++QD++A+RS +R AA G FA EI +E G ++ + + L LRP F G+VTAG +S +SDGA+A++++ Sbjct: 2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIEGHDANGALIKVLQDEVIRPETTMESLAALRPVFDPVNGTVTAGTSSALSDGASAMLIM 251
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24 Identity = 87/260 (33.46%), Postives = 130/260 (50.00%), Query Frame = 1 Query: 94 IVGVARTPMGGFLGSL-SSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFK-EGGSVTAGNASIISDGAAALVLVS 861 IV RTPMG G + + A L + ++ L R V P + ++++G V G AR AAL AGIP+SV T+N++C S M+A+ AA++I G D + GG+E M + P + H L + MG+ AE A H I+R++QD +A RS +R AA G F EI +E + G ++ D + + L KLRP F G+VTAG +S +SDGA+A++++S Sbjct: 6 IVDCIRTPMGRSKGGVFKNKRAEDLSAHLMKGLLDRNPAVDPASIDDIYWGCVQQTLEQGFNVARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGAGDTYLIGGVEHMGHVP-----------MTHGNDFHPGLATSIAQAAG--SMGLTAEYLATLHGISREQQDEFAYRSHQRAQAATVEGRFRREILAMEGHAADGSLILVEDDEVIRPETTVEGLSKLRPVFNPASGTVTAGTSSALSDGASAMLVMS 252
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_ERWT9 (3-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fadA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24 Identity = 93/266 (34.96%), Postives = 136/266 (51.13%), Query Frame = 1 Query: 88 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSII--VDKDEGLE-KFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLVSG 864 V IV RTPMG G + V A L + + L R +V P + ++++G V G AR AAL A IP+SV TT+N++C S M+A+ AA++I +G + GG+E M + P + H L + MG+ AE+ A H I+R+ QD +A RS +R AA +G FA EI V G ++ D DE + + LM LRP+F G+VTAG++S +SDGAAA++++SG Sbjct: 4 VVIVDAIRTPMGRSKGGAFRHVRAEDLSAHLMRSLLSRNPSVDPATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPATTVNRLCGSSMQALHDAARAIMVGDARTCLIGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDRFAARSHQRAAAATQAGHFAAEIVAV---CGHDADGVLKRYDADEVIRPETTVESLMALRPAFDPVDGTVTAGSSSALSDGAAAMLIMSG 253
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24 Identity = 86/269 (31.97%), Postives = 136/269 (50.56%), Query Frame = 1 Query: 70 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAK-LMKLRPSF-KEGGSVTAGNASIISDGAAALVLVS 861 S+ +DV IV RTPMG G V A KL + I+ + R N L ++V +G V + G AR ++ AG+P + T+N++C S M+A+ A+QSI G D+ V GG+E M + + H ++ + N MG+ AE+ H ITR++QD++ +RS K A G + EI P+E G ++ + DE + + + + KLRP F G+VTAG +S +SDGA+A++++S Sbjct: 2 SLNPKDVVIVDAVRTPMGKSRNGQFRHVRAEKLSAQLIQALMARNPNWDIQLTEDVIWGCVNQTKEQGMNIARNISMLAGLPRTSAAQTVNRLCGSSMQALHSASQSIMTGNGDVFVIGGVEHMGHV-----------AMDHGIDLNPEMSKVTAKASN--MMGLTAEMLGKMHGITREQQDAFGVRSHKLAWEATQQGRWDNEIVPIEGHDQNGH-KVLCEIDEVIRPGASIEDMQKLRPVFDPANGTVTAGTSSALSDGASAMLVMS 256
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadA PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24 Identity = 83/263 (31.56%), Postives = 127/263 (48.29%), Query Frame = 1 Query: 82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLV 858 + IV RTPMG G +V A L + ++ L+ + P L+++V +G V G AR A+L AGIP + T+N++C S M A+ AA++I G+ D + GG+E M + P GM MG+ AE+ H ITR++QD++A+RS +R AA G FA EI +E G ++ + + L LRP F G+VTAG +S +SDGA+A++++ Sbjct: 2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANKVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIEGHDANGALIKVLQDEVIRPETTMESLAALRPVFDPVNGTVTAGTSSALSDGASAMLIM 251
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24 Identity = 82/264 (31.06%), Postives = 135/264 (51.14%), Query Frame = 1 Query: 82 RDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVLVS 861 ++V IV RTPMG G A L + ++ L+R NV P ++++++G V G AR A+L AG+P S+ TT+N++C S M+A+ A+++I +G DI + GG+E M + P + GM MG+ AE+ H I+R++QD++A S ++ A G F EI P+E G +++ + + L LRP+F G+VTAG++S +SDGA+A++++S Sbjct: 2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHMGHVPMNHGVDFHSGLSKNVAKASGM-------------MGLTAEMLGKMHGISREQQDAFAFASHQKAHRATIEGHFDSEILPMEGHDENGALTLVKHDEVIRPETTLEGLAALRPAFDPANGTVTAGSSSALSDGASAMLIMS 252
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24 Identity = 91/275 (33.09%), Postives = 135/275 (49.09%), Query Frame = 1 Query: 76 KARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPL-----LVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL-------AEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEG-LEKFDAAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVL 855 + DV IV R+ +G GF G+ V+ L + + R +PL L++EV GNVL+ G R A L +GIP S +N+ CSSG+ AV A I++G DI +A G+ESM+N K + +E + +R ++ MG+ E A I+R +QD +A S+++ A+N GLF EI P+++ G I DEG A L +RP+F K+ G+ TAGNAS +SDG A ++L Sbjct: 32 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFP-EPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIP---------------MGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS-----ICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLL 285
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24 Identity = 88/272 (32.35%), Postives = 139/272 (51.10%), Query Frame = 1 Query: 70 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFG---MGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLE-KFDAAKLMKLRPSFK-EGGSVTAGNASIISDGAAALVLVS 861 S+ RDV IV RTPMG G + + A + + I L+R A V P V++V +G V + G AR A+L IP++ T++++C S M A+ AAQ+I G D+ V GG+E M GH +++ G+ + +Y MG+ AE+ H ITR++QD++ +RS + A G F EI P++ G + D DE + + L L+P+F +GG+VTAG +S I+DGA+ ++++S Sbjct: 2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNAKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKLF-DYDETIRPETTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMS 256 The following BLAST results are available for this feature:
BLAST of CK939438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 268
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939438 ID=CK939438; Name=CK939438; organism=Citrus sinensis; type=EST; length=866bpback to top |