CK939438

Overview
NameCK939438
Unique NameCK939438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.428e-24
Identity = 88/272 (32.35%), Postives = 140/272 (51.47%), Query Frame = 1
Query:   70 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFG---MGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAK-LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVS 861
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R + V P  V++V +G V  +   G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M                GH +++ G+  +    +Y       MG+ AE+    H I+R++QD++A+RS +    A   G F  EI P++     G   I  D DE +      + L  L+P+F  +GG+VTAG +S I+DGA+ ++++S
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIF-DYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMS 256          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 81/264 (30.68%), Postives = 137/264 (51.89%), Query Frame = 1
Query:   82 RDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVLVS 861
            ++V IV   RTPMG    G      A  L +  ++  LKR  +V P  ++++++G V      G   AR +AL AG+P S+  TT+N++C S M+A+  A+++I +G  +I + GG+E M + P           + H       L   +        MG+ AE+    H I+R++QD++A+ S ++   A   G F  EI P+E     G  +++   +    +     L  LRP+F    G+VTAG++S +SDGA+A++++S
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVP-----------MNHGVDFHSGLSKSVAKASG--MMGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPIEGHDENGVLTLVTHDEVIRPETTLEGLAALRPAFDPANGTVTAGSSSALSDGASAMLVMS 252          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 81/264 (30.68%), Postives = 137/264 (51.89%), Query Frame = 1
Query:   82 RDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVLVS 861
            ++V IV   RTPMG    G      A  L +  ++  LKR  +V P  ++++++G V      G   AR +AL AG+P S+  TT+N++C S M+A+  A+++I +G  +I + GG+E M + P           + H       L   +        MG+ AE+    H I+R++QD++A+ S ++   A   G F  EI P+E     G  +++   +    +     L  LRP+F    G+VTAG++S +SDGA+A++++S
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVP-----------MNHGVDFHSGLSKSVAKASG--MMGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPMEGHDENGALTLVTHDEVIRPETTLEGLAALRPAFDPANGTVTAGSSSALSDGASAMLVMS 252          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 82/263 (31.18%), Postives = 128/263 (48.67%), Query Frame = 1
Query:   82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSFKE-GGSVTAGNASIISDGAAALVLV 858
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P  +++V +G V      G   AR A+L AGIP +    T+N++C S M+A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    G+VTAG +S +SDGA+A++++
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKEIYGIEGHDATGALIKVLQDEVIRPETTMESLAVLRPVFDPVNGTVTAGTSSALSDGASAMLIM 251          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 87/270 (32.22%), Postives = 132/270 (48.89%), Query Frame = 1
Query:   70 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAK-LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVSG 864
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R   V P  V++V +G V  +   G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD + +RS +    A   G F  EI P++     G   +  D DE +      + L  L+P+F  +GG+VTAG +S I+DGA+ ++++SG
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHLSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKVF-DFDETIRPETTLEGLASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSG 257          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 87/270 (32.22%), Postives = 132/270 (48.89%), Query Frame = 1
Query:   70 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAK-LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVSG 864
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R   V P  V++V +G V  +   G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD + +RS +    A   G F  EI P++     G   +  D DE +      + L  L+P+F  +GG+VTAG +S I+DGA+ ++++SG
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHLSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKVF-DFDETIRPETTLEGLASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSG 257          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 88/270 (32.59%), Postives = 133/270 (49.26%), Query Frame = 1
Query:   70 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKRAN-VKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAK-LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVSG 864
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R + V P  V++V +G V  +   G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD + +RS +    A   G F  EI P++     G   +  D DE +      + L  L+P+F  +GG+VTAG +S I+DGA+ +V++SG
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHLSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKVF-DFDETIRPETTLEGLASLKPAFNPKGGTVTAGTSSQITDGASCMVVMSG 257          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.608e-23
Identity = 82/263 (31.18%), Postives = 128/263 (48.67%), Query Frame = 1
Query:   82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVLV 858
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P  +++V +G V      G   AR A+L AGIP +    T+N++C S M+A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    G+VTAG +S +SDGA+A++++
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAHAATVEGRFAKEIYGIEGHDANGALIKVLHDEVIRPETSMESLAALRPVFDPANGTVTAGTSSALSDGASAMLVM 251          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_SHESA (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ANA-3) GN=fadA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.608e-23
Identity = 82/263 (31.18%), Postives = 128/263 (48.67%), Query Frame = 1
Query:   82 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVLV 858
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P  +++V +G V      G   AR A+L AGIP +    T+N++C S M+A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA EI  +E     G    ++  +    +     L  LRP F    G+VTAG +S +SDGA+A++++
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAHAATVEGRFAKEIYGIEGHDANGALIKVLHDEVIRPETSMESLAALRPVFDPANGTVTAGTSSALSDGASAMLVM 251          
BLAST of CK939438 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.608e-23
Identity = 87/270 (32.22%), Postives = 133/270 (49.26%), Query Frame = 1
Query:   70 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKRAN-VKPLLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPSIIVDKDEGLEKFDAAK-LMKLRPSFK-EGGSVTAGNASIISDGAAALVLVSG 864
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R + V P  V++V +G V  +   G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD + +RS +    A   G F  EI P++     G   +  D DE +      + L  L+P+F  +GG+VTAG +S I+DGA+ ++++SG
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHMGHVSMMHGVDPNPHLSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDLFGVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKVF-DFDETIRPETTLEGLASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSG 257          
The following BLAST results are available for this feature:
BLAST of CK939438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268
Match NameE-valueIdentityDescription
FADA_PSEFR9.428e-2432.353-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
FADA_VIBFM1.231e-2330.683-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_VIBF11.231e-2330.683-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_SHEON1.231e-2331.183-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
FADA_PSEPK1.231e-2332.223-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEP11.231e-2332.223-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEOL1.231e-2332.593-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]
FADA_SHESM1.608e-2331.183-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHESA1.608e-2331.183-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_PSEPU1.608e-2332.223-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_E09 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939438 ID=CK939438; Name=CK939438; organism=Citrus sinensis; type=EST; length=866bp
GCGGGGAAGTTTAAAGTTAAAGATTCTTTGANNNTACTATTTAGCATGGT
GCCTTTAGAACCTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGG
GTGTTGCACGTACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTT
TCAGCTACAAAGCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGC
CAACGTGAAACCACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTCTTA
GCGCCAATTTAGGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGG
ATTCCTAATTCTGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGG
GATGAAAGCTGTAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATG
ATATTGTTGTTGCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTAT
CTAGCAGAAGCAAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGA
TGGCATGCTCAAAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGG
GAGTATGTGCAGAAATATGTGCTAATAAACATACCATAACAAGGGATGAG
CAGGATTCATATGCTATTAGAAGCTTTAAGCGTGGGATTGCTGCACAAAA
TTCTGGTCTCTTTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAA
GAGGGAAACCATCCATAATTGTTGATAAGGATGAAGGTTTAGAAAAGTTT
GATGCTGCAAAGCTAATGAAGCTCAGACCCAGTTTTAAGGAAGGGGGTTC
TGTTACTGCTGGCAATGCTTCTATTATAAGTGATGGTGCAGCGGCACTTG
TACTGGTGAGTGGAGT
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