CN188195

Overview
NameCN188195
Unique NameCN188195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAB (50S ribosomal protein L15e OS=Pyrococcus abyssi GN=rpl15e PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.110e-32
Identity = 81/177 (45.76%), Postives = 107/177 (60.45%), Query Frame = -3
Query:  252 KQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 782
            K+S V + L++ R  ++R+ P++VR+ RPTR D+AR LGY+AKQ                    G    KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:   15 KKSYVGQLLKQ-RMIKWRREPAVVRIERPTRLDRARALGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKIRPSIRA 188          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_PYRFU (50S ribosomal protein L15e OS=Pyrococcus furiosus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.701e-32
Identity = 78/169 (46.15%), Postives = 100/169 (59.17%), Query Frame = -3
Query:  252 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 758
            L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ                    G    KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:   22 LLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKVRPSIRA 188          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_STAMF (50S ribosomal protein L15e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.368e-31
Identity = 80/186 (43.01%), Postives = 103/186 (55.38%), Query Frame = -3
Query:  210 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 767
            M  L R R  ++R+ P+I+R+ +PTR D+AR LGYKAKQ                         +P   G+      +S R +AEERA RK   L+VLNSY++ ED  YK++EVILVD  H AI NDP I WIC+  H+ R  RGLTSAGKK RGLR    L +    + +  WKR Q   L + R
Sbjct:   21 MLTLMRQRLIKWRREPAIIRIEKPTRLDRARALGYKAKQGFIIVRVRVRKGGLRKQRPNK--GRRPKRMGIYGFAPSKSLRLIAEERAARKYPNLEVLNSYYVGEDGNYKWYEVILVDPHHPAICNDPDIKWICEKQHRRRVFRGLTSAGKKMRGLRKSRGLKY----TIKYKWKRKQKERLLKKR 200          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_DESK1 (50S ribosomal protein L15e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.368e-31
Identity = 82/186 (44.09%), Postives = 107/186 (57.53%), Query Frame = -3
Query:  240 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKR 785
            K++S  +  L R R  E+R+ PS+VR+ +PTR DKAR LGYKAK                          +P   GV      +S R +AEERA RK  GL+VLNSY++ ED  YK++EVILVD  H +I NDP +NWIC+P ++ R  RGLTSAGKK RGLR     +G +++K        WKR
Sbjct:   14 KEKSRELEALIRQRLIEWRREPSVVRLEKPTRLDKARALGYKAKVGFIIVRVRVRKGGQRKPRPDS--GRRPKRMGVYGYAPAKSLRLIAEERAARKFPGLEVLNSYYVAEDGRYKWYEVILVDPHHPSICNDPDVNWICEPQNRGRVFRGLTSAGKKMRGLRKSRGLRGTVYYK--------WKR 189          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_PYRKO (50S ribosomal protein L15e OS=Pyrococcus kodakaraensis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.979e-31
Identity = 78/177 (44.07%), Postives = 104/177 (58.76%), Query Frame = -3
Query:  252 KQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 782
            K+S V   L++ R  ++R+ P + R+ RPTR D+AR LGY+AKQ                    G    KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGK+ RGL  KG    K RPS RA
Sbjct:   15 KKSYVGELLKK-RMIQWRRDPVVKRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGKRSRGLLNKGKGAEKVRPSIRA 188          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METKA (50S ribosomal protein L15e OS=Methanopyrus kandleri GN=rpl15e PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.979e-31
Identity = 76/175 (43.43%), Postives = 100/175 (57.14%), Query Frame = -3
Query:  234 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 758
            L + R  ++R+ PS+ R+ RPTR ++ARRLGY+AK                          +P   G  +    +SK+ +AEERA RK   L+VLNSYW+ ED  YKY+EVI+VD  H  I++D RINWIC+   K R  RG T AGKK RGLR +G    K RPS RA  +R +
Sbjct:   25 LLKERLPKWRKGPSVQRIKRPTRIERARRLGYRAKPGYVVVRVRVPKGGRRKSRPKK--GRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSYWVGEDGQYKYYEVIMVDPYHPQIKSDHRINWICQKSQKGRVFRGKTGAGKKARGLRKRGKGAEKVRPSLRAHRRRGK 197          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METMP (50S ribosomal protein L15e OS=Methanococcus maripaludis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.788e-31
Identity = 72/175 (41.14%), Postives = 100/175 (57.14%), Query Frame = -3
Query:  234 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 758
            LQ  R  ++R+ PS++R+ RPTR D+AR LGYKAKQ                         KP   G+ ++   +S + +AEERA ++   ++VLNSYW+ +D   K++E+ILVD  H +I+ND   +W+    HK R  RGLTSAGKK RGL  KG    KARP  RA  K+ +
Sbjct:   22 LQWARMQDWRKEPSVLRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATLGINKITMAKSIQRIAEERAAKRYPNMEVLNSYWVGQDGKQKWYEIILVDPCHPSIKNDKSYSWLSTGNHKGRANRGLTSAGKKGRGLMYKGKGAEKARPGVRANGKKTK 194          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_AERPE (50S ribosomal protein L15e OS=Aeropyrum pernix GN=rpl15e PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 79/183 (43.17%), Postives = 100/183 (54.64%), Query Frame = -3
Query:  210 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 758
            L + R  E+R+ PSI+RV +PTR D+AR LGYKAKQ                         +P   GV      +S R +AEERA RK   L VLNSY++ ED  YK++EVILVD  H AI+NDP +NW+    HK R  RGLTSAGKK RGLR    L    + + +  WK+     + R R
Sbjct:   24 LMKARLLEWRRQPSILRVEKPTRLDRARALGYKAKQGVIVARVRVRKGGRRKPRPNK--GRRPKRMGVYGFAPAKSLRLIAEERAQRKYPNLVVLNSYYVGEDGRYKWYEVILVDPNHPAIKNDPELNWVTTGKHKGRPFRGLTSAGKKMRGLRKSRGL----KGTHKYKWKKKAKERILRKR 200          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METHJ (50S ribosomal protein L15e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.746e-30
Identity = 78/170 (45.88%), Postives = 98/170 (57.65%), Query Frame = -3
Query:  240 RCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPT-NQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 746
            R  ++R+  SIVRV RPTR D+AR LGYKAKQ                      V G+ T   GV +    +S + +AEERA RK   ++VLNSYW+ ED   K++EVIL+D  H +I ND  +NWI KP H+ R  RGLTSAG K RG+R +G    K RPS RA   R
Sbjct:   28 RMQDWRREGSIVRVRRPTRIDRARALGYKAKQGIVVVRVKVRRGGRRASRY---VRGRRTARMGVNRKTMGKSIQRIAEERACRKYPNMEVLNSYWVGEDGRQKWYEVILLDPHHPSIINDKTLNWISKPGHRGRSERGLTSAGVKGRGMRRRGKGTEKCRPSVRANANR 194          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_HALSA (50S ribosomal protein L15e OS=Halobacterium salinarium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.746e-30
Identity = 77/177 (43.50%), Postives = 102/177 (57.63%), Query Frame = -3
Query:  231 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQT 758
            LQ  R  ++R+  +I RV RPTR DKAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   L+ LNSYW+ ED + K+FE IL+D  H AI+ND  +NWIC   HK+R  RG TSAG++ RGL+ +G      RPS  A  KRN++
Sbjct:   24 LQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNAD-KRNKS 196          
The following BLAST results are available for this feature:
BLAST of CN188195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15E_PYRAB2.110e-3245.7650S ribosomal protein L15e OS=Pyrococcus abyssi GN... [more]
RL15E_PYRFU4.701e-3246.1550S ribosomal protein L15e OS=Pyrococcus furiosus ... [more]
RL15E_STAMF1.368e-3143.0150S ribosomal protein L15e OS=Staphylothermus mari... [more]
RL15E_DESK11.368e-3144.0950S ribosomal protein L15e OS=Desulfurococcus kamc... [more]
RL15E_PYRKO3.979e-3144.0750S ribosomal protein L15e OS=Pyrococcus kodakarae... [more]
RL15E_METKA3.979e-3143.4350S ribosomal protein L15e OS=Methanopyrus kandler... [more]
RL15E_METMP6.788e-3141.1450S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_AERPE1.158e-3043.1750S ribosomal protein L15e OS=Aeropyrum pernix GN=... [more]
RL15E_METHJ5.746e-3045.8850S ribosomal protein L15e OS=Methanospirillum hun... [more]
RL15E_HALSA5.746e-3043.5050S ribosomal protein L15e OS=Halobacterium salina... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188195 ID=CN188195; Name=CN188195; organism=Citrus sinensis; type=EST; length=787bp
GGGGGGAAGGCAGGGCCCCCTTTTTATAGAGGTATTCATCTGGATAAAAC
AATCCATAGGAATTACAATATTCAATTGCCCAAATGAAACAAAATTAACC
ATGATGCAGCAAAAACTAACCCAAAACACTTGTTTCGGAGTTCAAACTCA
ACAGCAATTAAACTAGGTTGATAATGTGAAAAACACAAAGTAAACAATAC
AGAAGTTTAACGGTAACGCCTGAGCGAGAGAGTTTGGTTCCTCTTCCAGG
TTGCCCTTCTTGAAGGTCGTGCCTTGTGGTGCAAGTGACCCTTTCCTCGG
AGACCTCTGTACTTCTTCCCAGCAGAAGTGAGTCCACGAAGCTCCCTGTG
CTTGTGGACAGGCTTACAGATCCAGTTGATCCTGGGGTCATTGCGGATTG
CATTGTGGGCAGCATCCACCAGGATTACCTCAAAGTACTTGTAAGTTGAA
TCCTCATTGATCCAGTATGAGTTGAGAACCTTAAGGCCACCAAGCTTACG
ACCGGCACGTTCCTCAGCAACTGAACGCTTGCTGCGCTGGAATTTAAGCT
GAGTGACACCCTGGTTTGTCGGTTTACCATATACAATACCCTTGGGAACT
GGTCTCTTTCGTCCTCCACGTCTTACACGCACACGATAAACGACATAACC
CTGCTTGGCCTTGTAGCCCAAGCGGCGAGCCTTGTCGGGGCGAGTGGGAC
GGGTGACGCGGACGATGGAAGGGTGCTGACGGTACTCCCAGCACCTCACC
CTCTGCAAGAACCTCATCACATCCGACTGCTTCTTCC
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