CN188195

Overview
NameCN188195
Unique NameCN188195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12758 contig Csv1_Contig12758:113..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_HALS3 (50S ribosomal protein L15e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.746e-30
Identity = 77/177 (43.50%), Postives = 102/177 (57.63%), Query Frame = -3
Query:  231 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQT 758
            LQ  R  ++R+  +I RV RPTR DKAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   L+ LNSYW+ ED + K+FE IL+D  H AI+ND  +NWIC   HK+R  RG TSAG++ RGL+ +G      RPS  A  KRN++
Sbjct:   24 LQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNAD-KRNKS 196          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METTH (50S ribosomal protein L15e OS=Methanobacterium thermoautotrophicum GN=rpl15e PE=3 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 2.184e-29
Identity = 72/167 (43.11%), Postives = 94/167 (56.29%), Query Frame = -3
Query:  267 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKAR 767
            +R L   R  ++R+ P I R+ RPTR D+AR LGY+AK                          +PT  GV ++   +S + +AEER  RK   ++VLNSYW+ ED  YK++EVILVD  H AI+NDP+I WIC   H+ R  RGL S GKK RGLR +G    K R
Sbjct:   18 VRELMWERAPKWRRDPVIKRIERPTRIDRARALGYRAKPGYIVVRTRVRRGSQRKTRFK--AGRRPTRMGVKKITTAKSIKRIAEERVARKYPNMEVLNSYWVWEDGKYKFYEVILVDPNHLAIKNDPKIYWICVKQHRGRVFRGLISEGKKNRGLRNRGKGAEKVR 182          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_NATPD (50S ribosomal protein L15e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.865e-29
Identity = 74/175 (42.29%), Postives = 99/175 (56.57%), Query Frame = -3
Query:  234 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 758
            LQ  R  E+R   +I R+ RPTR DKAR LGYKAKQ                         K   QGV ++  +++ + +AEER+GRK   L+VLNSYW+ ED + K+FEVIL+D  H AI+ND  ++WIC    + R  RG TSAG++ RG + +G      RPS RA  KR +
Sbjct:   24 LQWQRQQEWRDQGAIERIERPTRLDKARSLGYKAKQGVVVARVSVRKGTARKQRFKAGRRSK--RQGVNKITRRKNLQRIAEERSGRKFRNLRVLNSYWVGEDGSQKWFEVILLDPEHGAIQNDDDLSWICDDSQRGRAYRGRTSAGQRGRGQQKRGKGTEHTRPSIRANDKRGK 196          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_HALWD (50S ribosomal protein L15e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.865e-29
Identity = 74/175 (42.29%), Postives = 95/175 (54.29%), Query Frame = -3
Query:  234 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 758
            LQ  R  E+R   +IVR+ RPTR DKAR LGYKAKQ                         K   QGV +L  + S + +AEERA RK   L+ L SYW+ ED + K+ E+IL+D  H AI ND  +NWIC   HK R  RGLT+AG+  RGL+ +G      RPS  +  +R +
Sbjct:   24 LQWQRKQEWRDQGAIVRIDRPTRLDKARELGYKAKQGVIIARVAVRKGGARKKRFTSGRRSK--RQGVNRLGRRTSIQRIAEERAARKYPNLRTLASYWVGEDGSQKWHEIILIDPEHAAIENDDDLNWICDDTHKGRAFRGLTNAGRSNRGLQNRGKGAEHTRPSAGSGSRRGK 196          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_ARCFU (50S ribosomal protein L15e OS=Archaeoglobus fulgidus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.298e-29
Identity = 71/171 (41.52%), Postives = 102/171 (59.65%), Query Frame = -3
Query:  234 RCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 746
            R  ++R+ P++VR+ RPTR D+AR LGYKAK+                         K     V +   +++ + +AEERA RK   ++VLNSYW+ ED  YK+FEVILVD  H AI++DP+++W+ +   + R  RGLTSAG+K RGLR KG    K RPS RA +++ +
Sbjct:   27 RLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNK--GRKSKGLMVNRRTPKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSRT--RGRVYRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKKR 193          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METST (50S ribosomal protein L15e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.084e-28
Identity = 73/165 (44.24%), Postives = 94/165 (56.97%), Query Frame = -3
Query:  267 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKAR 758
            L R R  ++R+ P I+R+ +PTR D+ARRLGYKAK                         G+ P   GV ++  ++S + +AEER  RK   L+VLNSYW+ ED   KY+EVILVD    +I++D +INWIC   H  R  RGLTSAGKK RGL  KG    K R
Sbjct:   25 LMRERLPKWRRQPVIIRIDKPTRIDRARRLGYKAKTGYVVARIRVRRGSRRKSRFKN---GRDPKRMGVNKISGEKSIQRMAEERVARKYPNLEVLNSYWVWEDGKAKYYEVILVDPQCPSIQHDNKINWICSKKHTRRAFRGLTSAGKKGRGLNKKGKGAEKVR 186          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METBU (50S ribosomal protein L15e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.849e-28
Identity = 70/175 (40.00%), Postives = 100/175 (57.14%), Query Frame = -3
Query:  234 QRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 755
            +R++ W  R+  S+ RV RPTR D+AR LGYKAKQ                      + G+ T   G  ++   +S + ++EERA RK   ++VLNSYW+ ED   K++EVILVD +H  I++D  +NWIC   H  R  RG TSAG+K RG++ +G    K RPS R+   R++
Sbjct:   27 ERLQVW--RKEGSVTRVERPTRIDRARSLGYKAKQGIVVARVKVRRGSMRKSRY---IRGRRTQHTGKNKITVGKSIQRISEERAARKYPNMEVLNSYWVGEDGKQKWYEVILVDPSHPVIKSDKNLNWICGKAHSGRVFRGKTSAGRKGRGMQTRGTGTEKTRPSVRSNLNRSK 196          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_HALLT (50S ribosomal protein L15e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.849e-28
Identity = 76/166 (45.78%), Postives = 91/166 (54.82%), Query Frame = -3
Query:  261 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 758
            LQ  R  E+R   +I R+ RPTR DKAR LGYKAKQ                         K   QGV +L  ++S + ++EERA RK   L+VLNSYW+ ED + K+ EVILVD  H AI ND  + WI    HK R  RGLTSAG K RG R +G    K RPS
Sbjct:   24 LQWQRKQEWRDEGAIERIERPTRLDKARELGYKAKQGVVVARVSVRKGGSRKQRHKAGRRSK--RQGVNRLSRRKSIQRISEERASRKYRNLRVLNSYWVGEDGSQKWHEVILVDPNHPAIENDGDLGWIASDDHKGRAFRGLTSAGTKGRGQRTRGTGTEKTRPS 187          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_META3 (50S ribosomal protein L15e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.174e-28
Identity = 71/181 (39.23%), Postives = 97/181 (53.59%), Query Frame = -3
Query:  243 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 785
            K     ++ LQ  R  ++R+ P++VRV +PTR D+AR LGYKAKQ                         KP    + ++   +S + +AEERA ++   L+VLNSY + ED   K++EVIL+D  H +I+ND     +C   H +R  RGLTSAGKK RGL  KG    K RP  RA  K
Sbjct:   13 KPSESYVKGLQWARMQDWRKEPTVVRVEKPTRIDRARSLGYKAKQGVIVARVAVRRGGLRKPRPKHSK--KPATMAMNKITMSKSIQRIAEERAAKRYPNLEVLNSYSVGEDGKRKWYEVILIDVNHPSIKNDSSYKNLCTGKHTNRVFRGLTSAGKKGRGLMNKGKGAEKVRPGIRANKK 191          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_THEAC (50S ribosomal protein L15e OS=Thermoplasma acidophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.565e-27
Identity = 75/178 (42.13%), Postives = 103/178 (57.87%), Query Frame = -3
Query:  252 KQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 782
            K+S++   +++ R  E+R  PSIVR+  PTR D+AR LG+K+K                      I+ G+ P      +L  ++S + +AEERA  K   ++VLNSY++ ED  YKYFEVILVD +H  I NDP I+WI +P +  R  RGLTSAG K RGLR       K+RPS R+
Sbjct:   18 KKSEIYDLVKK-RMIEWRHGPSIVRLEHPTRIDRARALGFKSKDGFIVVRSRVRRGGSNREK---IMGGRRPRRMAYNKLTRKKSLKLIAEERAADKYPNMEVLNSYYVGEDGLYKYFEVILVDRSHPNIFNDPHISWISEPQNTGRVYRGLTSAGYKVRGLRTGRKGSSKSRPSIRS 191          
The following BLAST results are available for this feature:
BLAST of CN188195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15E_HALS35.746e-3043.5050S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_METTH2.184e-2943.1150S ribosomal protein L15e OS=Methanobacterium the... [more]
RL15E_NATPD4.865e-2942.2950S ribosomal protein L15e OS=Natronomonas pharaon... [more]
RL15E_HALWD4.865e-2942.2950S ribosomal protein L15e OS=Haloquadratum walsby... [more]
RL15E_ARCFU8.298e-2941.5250S ribosomal protein L15e OS=Archaeoglobus fulgid... [more]
RL15E_METST1.084e-2844.2450S ribosomal protein L15e OS=Methanosphaera stadt... [more]
RL15E_METBU1.849e-2840.0050S ribosomal protein L15e OS=Methanococcoides bur... [more]
RL15E_HALLT1.849e-2845.7850S ribosomal protein L15e OS=Halorubrum lacusprof... [more]
RL15E_META39.174e-2839.2350S ribosomal protein L15e OS=Methanococcus aeolic... [more]
RL15E_THEAC1.565e-2742.1350S ribosomal protein L15e OS=Thermoplasma acidoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188195 ID=CN188195; Name=CN188195; organism=Citrus sinensis; type=EST; length=787bp
GGGGGGAAGGCAGGGCCCCCTTTTTATAGAGGTATTCATCTGGATAAAAC
AATCCATAGGAATTACAATATTCAATTGCCCAAATGAAACAAAATTAACC
ATGATGCAGCAAAAACTAACCCAAAACACTTGTTTCGGAGTTCAAACTCA
ACAGCAATTAAACTAGGTTGATAATGTGAAAAACACAAAGTAAACAATAC
AGAAGTTTAACGGTAACGCCTGAGCGAGAGAGTTTGGTTCCTCTTCCAGG
TTGCCCTTCTTGAAGGTCGTGCCTTGTGGTGCAAGTGACCCTTTCCTCGG
AGACCTCTGTACTTCTTCCCAGCAGAAGTGAGTCCACGAAGCTCCCTGTG
CTTGTGGACAGGCTTACAGATCCAGTTGATCCTGGGGTCATTGCGGATTG
CATTGTGGGCAGCATCCACCAGGATTACCTCAAAGTACTTGTAAGTTGAA
TCCTCATTGATCCAGTATGAGTTGAGAACCTTAAGGCCACCAAGCTTACG
ACCGGCACGTTCCTCAGCAACTGAACGCTTGCTGCGCTGGAATTTAAGCT
GAGTGACACCCTGGTTTGTCGGTTTACCATATACAATACCCTTGGGAACT
GGTCTCTTTCGTCCTCCACGTCTTACACGCACACGATAAACGACATAACC
CTGCTTGGCCTTGTAGCCCAAGCGGCGAGCCTTGTCGGGGCGAGTGGGAC
GGGTGACGCGGACGATGGAAGGGTGCTGACGGTACTCCCAGCACCTCACC
CTCTGCAAGAACCTCATCACATCCGACTGCTTCTTCC
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