CN188195

Overview
NameCN188195
Unique NameCN188195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_SULIY (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.565e-27
Identity = 73/177 (41.24%), Postives = 96/177 (54.24%), Query Frame = -3 
Query:  234 RVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 752
            R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:   24 RQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190
[Close]
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_SULIN (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.565e-27
Identity = 73/177 (41.24%), Postives = 96/177 (54.24%), Query Frame = -3 
Query:  234 RVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 752
            R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:   24 RQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190
[Close]
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_SULIM (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.565e-27
Identity = 73/177 (41.24%), Postives = 96/177 (54.24%), Query Frame = -3 
Query:  234 RVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 752
            R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:   24 RQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190
[Close]
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_SULIL (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.565e-27
Identity = 73/177 (41.24%), Postives = 96/177 (54.24%), Query Frame = -3 
Query:  234 RVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 752
            R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:   24 RQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190
[Close]
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_SULIK (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.565e-27
Identity = 73/177 (41.24%), Postives = 96/177 (54.24%), Query Frame = -3 
Query:  234 RVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 752
            R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:   24 RQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190
[Close]
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_SULIA (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.565e-27
Identity = 73/177 (41.24%), Postives = 96/177 (54.24%), Query Frame = -3 
Query:  234 RVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRG----KGHLHHKARPSRRATWKRNQ 752
            R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L+VL SY++ ED  YKY+E+I+VD +H  I+NDP   W+  P +++R  RGLTSAGKK RGLR     KG + HK        W R Q
Sbjct:   24 RQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK--------WSRKQ 190
[Close]
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METMJ (50S ribosomal protein L15e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.044e-27
Identity = 74/183 (40.44%), Postives = 101/183 (55.19%), Query Frame = -3 
Query:  234 QSDVMRFL-QRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 779
            +S+V   L +R++ W  R+  SIVRV  PTR D+AR LGYKAKQ                         +    G+ +L   +S + +AEERA RK   ++ LNSYW+ ED   K+FEVILVD  H +I++D  + W+  PVH+ R  RG TSAG K RG+R +G    K RPS R+   R +
Sbjct:   18 RSEVKALLWERLQTW--RREGSIVRVEHPTRIDRARSLGYKAKQGIVVVRVKIRRGGRRKPRYTR--GRRSARMGMRRLTPAKSLQRMAEERASRKFPNMEALNSYWVGEDGRSKWFEVILVDGHHPSIKSDRNLAWLANPVHRGRAERGKTSAGMKGRGMRTRGRGTEKTRPSIRSHANRGK 196
[Close]
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_SULTO (50S ribosomal protein L15e OS=Sulfolobus tokodaii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 71/194 (36.60%), Postives = 106/194 (54.64%), Query Frame = -3 
Query:  210 QSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHKARPSRRATWKRNQTLSLRRYR 779
            QSD  + + R R  E+R+ P++ R+ +PTR ++AR +GYKAKQ                         +P   GV      +  R +AEE+A RK   L+VL SY++ ED  YKY+E+I+VD  H  I++DP + W+  P ++ R  RGLTSAGKK RGL   RG KG + HK +   +   ++ +  + + YR
Sbjct:   14 QSDEWKKVLRQRLIEWRKSPAVERIDKPTRLNRARAIGYKAKQGFVVVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYSPAKGYRWIAEEKAARKFPNLEVLGSYYVGEDGMYKYYEIIMVDPNHPVIKSDPNLKWLQDPANRKRVFRGLTSAGKKARGLLKSRGLKGTVKHKWKKKEKEREQKKRHEATKYYR 205
[Close]
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_THEVO (50S ribosomal protein L15e OS=Thermoplasma volcanium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 73/170 (42.94%), Postives = 97/170 (57.06%), Query Frame = -3 
Query:  252 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 758
            +++ R   +R  PS+VR+  PTR D+AR LGYK+K                      I+ G+ P      +L  ++S + +AEERA  K   L+VLNSY++ ED  YKY+EVILVD +H  I NDP I+WI +P +  R  RGLTSAG K RGLR       K+RPS RA
Sbjct:   25 VEKSRMIGWRHGPSVVRLDHPTRIDRARALGYKSKDGFIVVRSRVRRGGSNREK---IMGGRRPRRLAYNKLTRKKSLKLIAEERAADKYPNLEVLNSYYVGEDGLYKYYEVILVDKSHPNIYNDPHISWISEPQNTGRVYRGLTSAGYKVRGLRTGRKGSSKSRPSIRA 191
[Close]
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_SULAC (50S ribosomal protein L15e OS=Sulfolobus acidocaldarius GN=rpl15e PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 75/195 (38.46%), Postives = 105/195 (53.85%), Query Frame = -3 
Query:  210 KQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHKARPSRRATWKRNQTLSLRRYR 782
            +  D  R + R R  E+R+ P+I R+ RPTR ++AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L+VL SY++ ED  YKY+EVI+VD +H  IR+DP + W+   V++ R  RGLTSAG+K RGL   RG KG +  K +  ++    + +  + R YR
Sbjct:   14 QNKDWRRSILRKRLIEWRRQPAITRIDRPTRLNRARALGYKAKQGFVMVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYGPSKGYRWIAEERAARKFPNLEVLGSYYVAEDGMYKYYEVIMVDYSHPVIRSDPELKWLQDSVNRKRVFRGLTSAGQKSRGLTKSRGLKGTVQRKWKKKQKERQLKRRHEATRYYR 206
The following BLAST results are available for this feature:
BLAST of CN188195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15E_SULIY1.565e-2741.2450S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIN1.565e-2741.2450S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIM1.565e-2741.2450S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIL1.565e-2741.2450S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIK1.565e-2741.2450S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIA1.565e-2741.2450S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_METMJ2.044e-2740.4450S ribosomal protein L15e OS=Methanoculleus maris... [more]
RL15E_SULTO2.669e-2736.6050S ribosomal protein L15e OS=Sulfolobus tokodaii ... [more]
RL15E_THEVO4.553e-2742.9450S ribosomal protein L15e OS=Thermoplasma volcani... [more]
RL15E_SULAC4.553e-2738.4650S ribosomal protein L15e OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188195 ID=CN188195; Name=CN188195; organism=Citrus sinensis; type=EST; length=787bp
GGGGGGAAGGCAGGGCCCCCTTTTTATAGAGGTATTCATCTGGATAAAAC
AATCCATAGGAATTACAATATTCAATTGCCCAAATGAAACAAAATTAACC
ATGATGCAGCAAAAACTAACCCAAAACACTTGTTTCGGAGTTCAAACTCA
ACAGCAATTAAACTAGGTTGATAATGTGAAAAACACAAAGTAAACAATAC
AGAAGTTTAACGGTAACGCCTGAGCGAGAGAGTTTGGTTCCTCTTCCAGG
TTGCCCTTCTTGAAGGTCGTGCCTTGTGGTGCAAGTGACCCTTTCCTCGG
AGACCTCTGTACTTCTTCCCAGCAGAAGTGAGTCCACGAAGCTCCCTGTG
CTTGTGGACAGGCTTACAGATCCAGTTGATCCTGGGGTCATTGCGGATTG
CATTGTGGGCAGCATCCACCAGGATTACCTCAAAGTACTTGTAAGTTGAA
TCCTCATTGATCCAGTATGAGTTGAGAACCTTAAGGCCACCAAGCTTACG
ACCGGCACGTTCCTCAGCAACTGAACGCTTGCTGCGCTGGAATTTAAGCT
GAGTGACACCCTGGTTTGTCGGTTTACCATATACAATACCCTTGGGAACT
GGTCTCTTTCGTCCTCCACGTCTTACACGCACACGATAAACGACATAACC
CTGCTTGGCCTTGTAGCCCAAGCGGCGAGCCTTGTCGGGGCGAGTGGGAC
GGGTGACGCGGACGATGGAAGGGTGCTGACGGTACTCCCAGCACCTCACC
CTCTGCAAGAACCTCATCACATCCGACTGCTTCTTCC
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