CN188195

Overview
NameCN188195
Unique NameCN188195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_UNCMA (50S ribosomal protein L15e OS=Uncultured methanogenic archaeon RC-I GN=rpl15e PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.947e-27
Identity = 69/171 (40.35%), Postives = 97/171 (56.73%), Query Frame = -3
Query:  234 RCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 746
            R  E+R+ P++V++ RPTR D+AR LGYKAKQ                         K  + G+  L  + S + +AE RA RK   ++VLNSYW+ +D  +K++E+ILVD  H +I +D  ++WI K  H+ R  RGLTSAGKK RG R KG    K  PS +A  +R +
Sbjct:   28 RLQEWRKEPTVVKIDRPTRLDRARALGYKAKQGIIVARAHVRRGGRRKSRYSR--GRKSKHMGLRTLTRRTSIQRMAEVRASRKFPNMEVLNSYWVGQDGKHKWYEIILVDPHHPSIASDKNLSWITKGTHRGRAERGLTSAGKKGRGQRRKGKGTEKNYPSVQAHDRRGK 196          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_SULSO (50S ribosomal protein L15e OS=Sulfolobus solfataricus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.766e-27
Identity = 69/173 (39.88%), Postives = 96/173 (55.49%), Query Frame = -3
Query:  234 RVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 752
            R R  ++R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L+VL SY++ ED  YKY+E+++VD +H  I++DP+  W+  P +++R  RGLTSAGKK RGLR    L    + + R  W R Q
Sbjct:   24 RQRLIKWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYSPAKGYRWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIVMVDPSHPVIKSDPKHKWLQDPSNRNRVFRGLTSAGKKVRGLRKSRGL----KGTVRYKWNRKQ 190          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METAC (50S ribosomal protein L15e OS=Methanosarcina acetivorans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.766e-27
Identity = 70/175 (40.00%), Postives = 97/175 (55.43%), Query Frame = -3
Query:  234 QRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 755
            +R++ W  R+  S+ R+ RPTR D+AR LGYKAKQ                        G+ T + G  ++    S + +AE RA R+   L+VLNSYW+ ED  +K+FEVILVD  H  I++D  +NW+C P  + R  RG TSAG+K RG+  +G    K RPS RA   R +
Sbjct:   27 ERLQVW--RKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNR---GRRTQKMGKNKVSGGMSIQRIAEVRADRRYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWVCDPSSRGRATRGKTSAGRKGRGMATRGKGTEKTRPSIRAYKSRGK 196          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METS5 (50S ribosomal protein L15e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.951e-26
Identity = 70/185 (37.84%), Postives = 102/185 (55.14%), Query Frame = -3
Query:  210 RVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHKARPSRRATWKRNQTLSLRRYR 752
            R R  E+R   ++ R+ +PTR D+AR LGYKAKQ                         +P   GV      +S + +AEE+A RK  GL+VL SY++ ED  YKY+EVILVD  +  I +DP+ NW+  P ++ R  RGLTSAG++ RGL   RG KG +H+K    ++   ++ +  + + YR
Sbjct:   24 RQRLVEWRNQNTVTRIEKPTRLDRARALGYKAKQGIIVARVKVEKGGMDKQRPNS--GRRPKRMGVYGFSPAKSLQFIAEEKAARKFPGLEVLGSYYVAEDGKYKYYEVILVDPHNPVIMSDPQFNWLKNPANRGRVFRGLTSAGRRTRGLLKSRGLKGTIHYKIARKKKEREQKKRHEASKYYR 206          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METMA (50S ribosomal protein L15e OS=Methanosarcina mazei GN=rpl15e PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.951e-26
Identity = 71/175 (40.57%), Postives = 96/175 (54.86%), Query Frame = -3
Query:  234 QRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 755
            +R++ W  R+  S+ R+ RPTR D+AR LGYKAKQ                        G+ T + G  ++    S + +AE RA RK   L+VLNSYW+ ED  +K+FEVILVD  H  I++D  +NWIC    + R  RG TSAG+K RG+  +G    K RPS RA   R +
Sbjct:   27 ERLQVW--RKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNR---GRRTQKMGKNKVSGGMSIQRIAEARADRKYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWICDASIRGRATRGKTSAGRKGRGMSTRGKGTEKTRPSIRAHKSRGK 196          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_HALMA (50S ribosomal protein L15e OS=Haloarcula marismortui GN=rpl15e PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 3.854e-26
Identity = 71/169 (42.01%), Postives = 91/169 (53.85%), Query Frame = -3
Query:  252 LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 758
            LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                         K   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+
Sbjct:   24 LQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRS 190          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METB6 (50S ribosomal protein L15e OS=Methanoregula boonei (strain 6A8) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.121e-25
Identity = 68/177 (38.42%), Postives = 96/177 (54.24%), Query Frame = -3
Query:  252 QSDVMRFL-QRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 779
            +SDV   L  R++ W  R+  S+ R+ RPTR D+AR LGYKAKQ                     +   +    G       +S + +AEERA  +   ++VLNSYW+ +D   KY+EVILVD  H +I++D  + W+  P H+ R  RG TSAG+K RG+R +G    K RPS R+
Sbjct:   18 KSDVKALLWDRMQVW--RREGSVTRIDRPTRIDRARALGYKAKQGIAVVRVHVRRGGRRASRY--VRARRSARMGKNSSTPGKSIQRIAEERASVRYPNMEVLNSYWVGQDGKLKYYEVILVDGHHPSIQSDKNLAWLANPTHRGRAERGKTSAGRKGRGMRTRGRGTEKTRPSIRS 190          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_PICTO (50S ribosomal protein L15e OS=Picrophilus torridus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.263e-25
Identity = 74/179 (41.34%), Postives = 103/179 (57.54%), Query Frame = -3
Query:  252 KQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL-HHKARPSRRA 782
            K+SD+   +Q+ R   +R+  S+VR+  PTR D+AR LGYKAKQ                     I+ G+ P      +L  ++S + +AEERA  K   ++VLNSY++ ED  YKY+EVIL+D +  A+ +D  ++WI    +K R  RGLTSAG K RGL G G L   K+RPS RA
Sbjct:   16 KKSDIYP-VQKARMVSWRKSGSVVRLDYPTRLDRARSLGYKAKQGFIIVRSRVRKGGQHRPK---IMGGRRPRRLAYNKLTVKKSIQLIAEERAADKYPNMEVLNSYYVGEDGLYKYYEVILIDRSSPAVLSDKNVSWIANSANKGRVYRGLTSAGYKSRGL-GHGRLGSAKSRPSIRA 189          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_METLZ (50S ribosomal protein L15e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.676e-21
Identity = 64/175 (36.57%), Postives = 97/175 (55.43%), Query Frame = -3
Query:  261 QSDVMRFL-QRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 779
            +S V + L +R++ W  R+  ++VR+ RPTR D+AR LGYKAKQ                      + G+ TN+ G+ +    ++ +S+AEERA  +   ++VLNSYW+ +D   KY+EVILVD    ++  D  + W+     + R  RG TSAG++ RGL  +G    K RPS
Sbjct:   18 ESGVKKLLWERMQTW--RRQGAVVRLERPTRIDRARELGYKAKQGIIVVRASIRRGGRRKSRY---IRGRRTNRMGMRKATPGKNLQSIAEERAATRYPNMEVLNSYWVGQDGKSKYYEVILVDRNSPSVLADKNLAWVADT--RGRVFRGKTSAGRRARGLHNRGTGTEKCRPS 185          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15E_NANEQ (50S ribosomal protein L15e OS=Nanoarchaeum equitans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.368e-21
Identity = 64/173 (36.99%), Postives = 87/173 (50.29%), Query Frame = -3
Query:  243 FLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 761
            + QR++ W  R+ P IV V RPTR D+AR LGYK                        I  G+             + + +AEERA R    ++VL SYW+ ED  YK++EVILVD  +  I N P   W+ +   + R  RG TS+ +K+RGLR  G    K RPS+RA +K
Sbjct:   22 YKQRIQQW--RREPPIVEVERPTRIDRARALGYKP---LPGIKIVRVRVRKGTRKREEIKGGRRPKAEYRIRPLGVNLQWIAEERANRLHRNMEVLGSYWVGEDGLYKWYEVILVDPFNPNIYNRPEYVWLLQKNQRGRVFRGKTSSARKFRGLRNGGLGAEKVRPSKRANFK 189          
The following BLAST results are available for this feature:
BLAST of CN188195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15E_UNCMA5.947e-2740.3550S ribosomal protein L15e OS=Uncultured methanoge... [more]
RL15E_SULSO7.766e-2739.8850S ribosomal protein L15e OS=Sulfolobus solfatari... [more]
RL15E_METAC7.766e-2740.0050S ribosomal protein L15e OS=Methanosarcina aceti... [more]
RL15E_METS52.951e-2637.8450S ribosomal protein L15e OS=Metallosphaera sedul... [more]
RL15E_METMA2.951e-2640.5750S ribosomal protein L15e OS=Methanosarcina mazei... [more]
RL15E_HALMA3.854e-2642.0150S ribosomal protein L15e OS=Haloarcula marismort... [more]
RL15E_METB61.121e-2538.4250S ribosomal protein L15e OS=Methanoregula boonei... [more]
RL15E_PICTO3.263e-2541.3450S ribosomal protein L15e OS=Picrophilus torridus... [more]
RL15E_METLZ1.676e-2136.5750S ribosomal protein L15e OS=Methanocorpusculum l... [more]
RL15E_NANEQ6.368e-2136.9950S ribosomal protein L15e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188195 ID=CN188195; Name=CN188195; organism=Citrus sinensis; type=EST; length=787bp
GGGGGGAAGGCAGGGCCCCCTTTTTATAGAGGTATTCATCTGGATAAAAC
AATCCATAGGAATTACAATATTCAATTGCCCAAATGAAACAAAATTAACC
ATGATGCAGCAAAAACTAACCCAAAACACTTGTTTCGGAGTTCAAACTCA
ACAGCAATTAAACTAGGTTGATAATGTGAAAAACACAAAGTAAACAATAC
AGAAGTTTAACGGTAACGCCTGAGCGAGAGAGTTTGGTTCCTCTTCCAGG
TTGCCCTTCTTGAAGGTCGTGCCTTGTGGTGCAAGTGACCCTTTCCTCGG
AGACCTCTGTACTTCTTCCCAGCAGAAGTGAGTCCACGAAGCTCCCTGTG
CTTGTGGACAGGCTTACAGATCCAGTTGATCCTGGGGTCATTGCGGATTG
CATTGTGGGCAGCATCCACCAGGATTACCTCAAAGTACTTGTAAGTTGAA
TCCTCATTGATCCAGTATGAGTTGAGAACCTTAAGGCCACCAAGCTTACG
ACCGGCACGTTCCTCAGCAACTGAACGCTTGCTGCGCTGGAATTTAAGCT
GAGTGACACCCTGGTTTGTCGGTTTACCATATACAATACCCTTGGGAACT
GGTCTCTTTCGTCCTCCACGTCTTACACGCACACGATAAACGACATAACC
CTGCTTGGCCTTGTAGCCCAAGCGGCGAGCCTTGTCGGGGCGAGTGGGAC
GGGTGACGCGGACGATGGAAGGGTGCTGACGGTACTCCCAGCACCTCACC
CTCTGCAAGAACCTCATCACATCCGACTGCTTCTTCC
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