CN188192

Overview
NameCN188192
Unique NameCN188192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12761 contig Csv1_Contig12761:20..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 7.098e-63
Identity = 114/190 (60.00%), Postives = 151/190 (79.47%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + T R++  K+ L  + IDF GHALA
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.211e-62
Identity = 113/189 (59.79%), Postives = 146/189 (77.25%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            MDEEYDVIVLGTGL EC+LSGLLSVDG KVLH+DRNDYYG +S+SLNL QL+  FR  EQ P  LG  RD+ VD++PKF++ANG L  +LI+TDVT+Y+ FK + GS+VY  G++ KVP  +MEALKSPLM +FEKRRA+KF  +V +Y E+DP T++ +++ R +   +  K+GL   T DFIGHA+A
Sbjct:    1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFRPGEQRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSGTQDFIGHAMA 189          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.581e-62
Identity = 112/190 (58.95%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+  ++ L+KRF+   QPPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + + R++  K+ L  + IDF GH+LA
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.581e-62
Identity = 113/190 (59.47%), Postives = 151/190 (79.47%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KR++    PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + T R++  K+ L  + IDF GHALA
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRYKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.581e-62
Identity = 112/190 (58.95%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+  ++ L+KRF+   QPPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + + R++  K+ L  + IDF GH+LA
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.339e-61
Identity = 112/190 (58.95%), Postives = 150/190 (78.95%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            M+EEYDVIVLGTGL ECILSG+++V+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PPA +G  RD+N+D+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  +    E+  K+ L  + IDF GHALA
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPASMGRGRDWNLDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.297e-60
Identity = 108/193 (55.96%), Postives = 151/193 (78.24%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN----EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N    E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL ++T +FIGHA+A
Sbjct:    6 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMA 198          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: RABEP_DROME (Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 50/180 (27.78%), Postives = 87/180 (48.33%), Query Frame = 3
Query:  123 NMDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHL---------------------------GSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN 581
            ++ E++D++V+GTG  E  ++   S  G  VLH+D N+YYG   SS ++  L  R     +P + L                             SR +++D+ P+ + A G LV++LI +++ +Y  F+AVD   + + G++  VP +  +   +  + I EKR   KF     DY E+
Sbjct:    4 DLPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLCPRILYAAGELVQLLIKSNICRYAEFRAVDHVCMRHNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGED 183          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: RAEP_YEAST (Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae GN=MRS6 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 49/166 (29.52%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  132 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLG------------------SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD 575
            ++ DV++ GTG+ E +L+  L+  G  VLH+D+NDYYG  S++L + Q+ KR+  NE     +                   SSRD+ +D+ PK + A   L+ +LI + V +YL F+++     Y      K+  T  E      + +  KR   KF  +V +++
Sbjct:   45 DKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQI-KRW-VNEVNEGSVSCYKNAKLYVSTLIGSGKYSSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNFHTYENDCFEKLTNTKQEIFTDQNLPLMTKRNLMKFIKFVLNWE 208          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: RAEP_CANAL (Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 51/161 (31.68%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  141 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK-----------RFR-------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPA-TDMEALKSPLMGIFEKRRARKFFIYV 563
            DV+++GTGL+E IL+  LS  G +VLH+D N YYG   S+L + QL K           +F+       G +Q   +  +S+DY +D+ PK +     L+ +LI + V +YL F+++    V+ N     KV A T  +      + +  KR   KF  ++
Sbjct:    5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQFQDAQIYIPGGKQSNQY--TSKDYGIDLTPKIMFCQSDLLSLLIKSRVYRYLEFQSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTKRYLMKFLKFL 163          
The following BLAST results are available for this feature:
BLAST of CN188192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GDIB_HUMAN7.098e-6360.00Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDI1_SCHPO1.211e-6259.79Probable secretory pathway GDP dissociation inhibi... [more]
GDIB_RAT1.581e-6258.95Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_PONAB1.581e-6259.47Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDIB_MOUSE1.581e-6258.95Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIB_CANFA1.339e-6158.95Rab GDP dissociation inhibitor beta OS=Canis famil... [more]
GDI1_YEAST3.297e-6055.96Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]
RABEP_DROME8.502e-1627.78Rab proteins geranylgeranyltransferase component A... [more]
RAEP_YEAST2.094e-1429.52Rab proteins geranylgeranyltransferase component A... [more]
RAEP_CANAL1.960e-1231.68Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188192 ID=CN188192; Name=CN188192; organism=Citrus sinensis; type=EST; length=694bp
GAGGGCTCCTCCTTCTCTCACTCTAATTCCTTTCTTTGCTTCTATTAATA
TTACTCCCTTCACTTTGACCTAACCCACAAAAACCTCTGAATCAGAAATC
AAAAATCAAAAATCAAATCATCAACATGGATGAAGAGTATGATGTCATCG
TCTTGGGAACCGGTCTCAAGGAATGCATCCTCAGTGGTCTCCTCTCTGTT
GATGGCCTCAAGGTCCTGCACATGGACAGGAATGATTATTATGGAGGAGA
GTCATCATCGCTCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAATG
AACAACCTCCTGCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACATG
ATCCCGAAGTTTATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTCA
TACTGATGTTACAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTCG
TCTATAATAAAGGAAAGGTCCATAAGGTGCCAGCAACTGATATGGAAGCG
CTCAAATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTT
TTTCATTTATGTTCAAGATTATGATGAAAATGATCCCAAAACACACGAGG
GAATGGACTTGACCAGGGTGACCACTAGAGAGTTGATTGCGAAGTATGGT
CTTGATGACAACACTATTGACTTCATTGGTCATGCATTGGCACT
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