CN188191

Overview
NameCN188191
Unique NameCN188191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 1.102e-53
Identity = 99/189 (52.38%), Postives = 141/189 (74.60%), Query Frame = -3
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP  ++   + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  239 ARLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTG 426          
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.102e-53
Identity = 99/189 (52.38%), Postives = 141/189 (74.60%), Query Frame = -3
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP  ++   + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  239 ARLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTG 426          
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.880e-53
Identity = 99/189 (52.38%), Postives = 140/189 (74.07%), Query Frame = -3
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  239 ARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESLIFISRTYDATTHFETTCDDIKNIYKRMTG 426          
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 1.759e-51
Identity = 96/189 (50.79%), Postives = 137/189 (72.49%), Query Frame = -3
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ ++Y  + G
Sbjct:  239 ARLSAIYGGTYMLNKPIEEIIM-QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKDIYKRMMG 426          
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.298e-51
Identity = 96/189 (50.79%), Postives = 138/189 (73.02%), Query Frame = -3
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NT+D++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  239 ARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCGDIKDIYKRMTG 426          
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.489e-50
Identity = 94/189 (49.74%), Postives = 134/189 (70.90%), Query Frame = -3
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYMLN+P  ++ + ++G  +GV S  + AK K+++ DPSY   KVR VGR+ RAI I++HPIPNT++  SVQ+I+PQ Q+ R+ D+Y+   S  HNV PKG ++A +ST  ET +P +E+ PG+ LLGPV E F  + + YEPV + + D C+IS S DAT+HFE+   DV ++Y  +TG
Sbjct:  238 ARLSAIYGGTYMLNQPVDEIVYGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFETLTCDVRDIYKRMTG 426          
BLAST of CN188191 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.214e-45
Identity = 91/191 (47.64%), Postives = 131/191 (68.59%), Query Frame = -3
Query:  281 ARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVG-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 847
            ARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y   K +  G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++A +ST  ETD P  EL+P   LLGP++E F  I + +EP  + S DN ++S SYDA++HFES   DV ++Y  +TG
Sbjct:  247 ARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTG 437          
The following BLAST results are available for this feature:
BLAST of CN188191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIB_RAT1.102e-5352.38Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE1.102e-5352.38Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIB_PONAB1.880e-5352.38Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDIB_BOVIN1.759e-5150.79Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_PIG2.298e-5150.79Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]
GDI1_SCHPO1.489e-5049.74Probable secretory pathway GDP dissociation inhibi... [more]
GDI1_YEAST3.214e-4547.64Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188191 ID=CN188191; Name=CN188191; organism=Citrus sinensis; type=EST; length=849bp
TTTTGAAAGCGGGCCCCCTTTTTAGATGCATGTTTGATATCTACACATTA
GTTCCCACGGCGAACAATTAAAACACGATTCCATTACATAATAATAATAA
TAAAATCACCAACTATGAGAAACAGAAACCATGACAAAGTCCAAGTGTCC
AACCCCCACATTCTTTCGAGCTTTATCCCACTGACGGCATTACATGCGCA
AACATGAACGGGAAGTTGCAGATTCCTCATTCTTCTGCAGCACTGGCAGC
ACTTAAATCCACACTGAGGTCAAGAACCTTTCCGGTTATCATGGTATACA
TGTTCAGTACATCCGTGACAGTTGACTCAAAGTGTGTTGTGGCATCATAG
CTCGTTGAGATAAAGCAATTGTCCAAAGAAGGTTCATTAACTGGTTCATA
TCTGTCATATATATCATAGAATATTTCATCGACTGGACCCAAAAGATCAA
TTCCAGGCTTAAGTTCAGTCTGTGGATGATCAGTCTCTGCCTCAGTCGAT
ACGAATGCAATGAATTTGCCCTTTGGAGCAACATTGTGGGAGTAGGAACA
ACAGAAGAGGTACATGTCTGATCTACGACCCAACTGTTTTTGCGGAAGGA
TAACCTGCACTGAATGGGAATCATTGGTGTTTGGGATTGGGTGGCTCATA
ATAGCGATTGCCCTAGCAACCCTGCCAACCTTCCTCACCTTGTTGGACAA
ATAGGAAGGATCACAAACAACTTTCTTGCACTTTGCAGTTTCCCCTTCTG
ACGTGACACCGACTACTTTACCTTCTTCATCAAACTCTACCTTGCACTCA
GGTTTATTCAACATATACGTCCCACCATAAACAGCACTAAGCCGAGCAA
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