CK939424

Overview
NameCK939424
Unique NameCK939424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_CYAPA (Photosystem II reaction center protein H OS=Cyanophora paradoxa GN=psbH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 3
Query:   51 PKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            P+RT+ G +L+PLNSEYGKVAPGWGTTPLM V M LF VFL II++IYNSS+LL+ + ++
Sbjct:    2 PQRTALGNILRPLNSEYGKVAPGWGTTPLMAVFMLLFFVFLLIIIQIYNSSLLLENVQVS 61          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_CYAP8 (Photosystem II reaction center protein H OS=Cyanothece sp. (strain PCC 8801) GN=psbH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   54 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISL 227
            +RT  G LL+PLNSEYGKV PGWGTTPLMGV M LF VFL IIL+IYNSS++L+G ++
Sbjct:    3 QRTGLGDLLRPLNSEYGKVVPGWGTTPLMGVFMGLFLVFLLIILQIYNSSLILEGFTV 60          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_STIHE (Photosystem II reaction center protein H OS=Stigeoclonium helveticum GN=psbH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 3
Query:   60 TSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            T  G LLKPLNSE GKV PGWGTT LMGV MALFAVFL I+LEIYNSSV+LDG++++
Sbjct:   21 TPLGRLLKPLNSEAGKVLPGWGTTVLMGVFMALFAVFLVILLEIYNSSVILDGVTMS 77          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_OLTVI (Photosystem II reaction center protein H OS=Oltmannsiellopsis viridis GN=psbH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 3
Query:   60 TSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            T+ G LL+PLNSEYGKVAPGWGTT LMG  MALFAVFL IILEIYNSSVLL+ + ++
Sbjct:   14 TALGTLLRPLNSEYGKVAPGWGTTVLMGTFMALFAVFLVIILEIYNSSVLLEDVPMS 70          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_CYAA5 (Photosystem II reaction center protein H OS=Cyanothece sp. (strain ATCC 51142) GN=psbH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   54 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISL 227
            +RT  G LL+PLNSEYGKV PGWGTTPLMGV M LF VFL IIL+IYNSS++L+G ++
Sbjct:    3 QRTRLGDLLRPLNSEYGKVVPGWGTTPLMGVFMGLFLVFLLIILQIYNSSLILNGFTV 60          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_SYNJA (Photosystem II reaction center protein H OS=Synechococcus sp. (strain JA-3-3Ab) GN=psbH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.823e-16
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 3
Query:   57 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            RT  G LL+PLNSEYGKVAPGWGTTPLM V M LF +FL IIL+IYN S+LL+ I+++
Sbjct:    4 RTKLGDLLRPLNSEYGKVAPGWGTTPLMAVFMVLFGIFLLIILQIYNKSLLLEDINVS 61          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_MICAN (Photosystem II reaction center protein H OS=Microcystis aeruginosa (strain NIES-843) GN=psbH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 3
Query:   54 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            +RT  G +L+PLNSEYGKV+PGWGTT LMGV MALF VFL IIL+IYNSS++L+G +++
Sbjct:    3 QRTRLGEILRPLNSEYGKVSPGWGTTLLMGVFMALFLVFLLIILQIYNSSLILEGFNVD 61          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_EMIHU (Photosystem II reaction center protein H OS=Emiliania huxleyi GN=psbH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   57 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            RT  G +L+PLN+EYGKVAPGWGTTP+MGV M LF VFL IIL+IYNSS++L+ + ++
Sbjct:    4 RTRLGEILRPLNAEYGKVAPGWGTTPVMGVFMGLFLVFLVIILQIYNSSIILENVDVD 61          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_SYNP6 (Photosystem II reaction center protein H OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psbH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 3
Query:   54 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLD 215
            +RT  G +L+PLNSEYGKVAPGWGTTP+MGV M LF VFL IIL+IYNSS++LD
Sbjct:    3 QRTRLGDILRPLNSEYGKVAPGWGTTPVMGVFMLLFFVFLLIILQIYNSSLVLD 56          
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_SYNE7 (Photosystem II reaction center protein H OS=Synechococcus elongatus (strain PCC 7942) GN=psbH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 3
Query:   54 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLD 215
            +RT  G +L+PLNSEYGKVAPGWGTTP+MGV M LF VFL IIL+IYNSS++LD
Sbjct:    3 QRTRLGDILRPLNSEYGKVAPGWGTTPVMGVFMLLFFVFLLIILQIYNSSLVLD 56          
The following BLAST results are available for this feature:
BLAST of CK939424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_CYAPA2.813e-1766.67Photosystem II reaction center protein H OS=Cyanop... [more]
PSBH_CYAP82.813e-1770.69Photosystem II reaction center protein H OS=Cyanot... [more]
PSBH_STIHE4.798e-1775.44Photosystem II reaction center protein H OS=Stigeo... [more]
PSBH_OLTVI4.798e-1775.44Photosystem II reaction center protein H OS=Oltman... [more]
PSBH_CYAA54.798e-1770.69Photosystem II reaction center protein H OS=Cyanot... [more]
PSBH_SYNJA1.823e-1668.97Photosystem II reaction center protein H OS=Synech... [more]
PSBH_MICAN2.381e-1667.80Photosystem II reaction center protein H OS=Microc... [more]
PSBH_EMIHU2.381e-1665.52Photosystem II reaction center protein H OS=Emilia... [more]
PSBH_SYNP63.110e-1674.07Photosystem II reaction center protein H OS=Synech... [more]
PSBH_SYNE73.110e-1674.07Photosystem II reaction center protein H OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_G09 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939424 ID=CK939424; Name=CK939424; organism=Citrus sinensis; type=EST; length=839bp
GGGTAGGATTTATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGT
CCAAAAAGAACTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATA
TGGTAAAGTAGCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGTAA
TGGCTTTATTTGCGGTATTCCTATCTATTATTTTGGAGATTTATAATTCG
TCCGTTTTACTGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAA
TCACAAAATATTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTT
TCGTTGATTGGTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAA
TATGAGTGTGCGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATA
GATCTGTCGTCTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGA
GTATCTGGAGCACGGAATATATGAAATAGATCACGAAGTATTCGAACTAT
GATTCATACTTAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCC
AAAGACAAAATTTGCAATTGCAAGATTTTTCTTCTTTCAAATTCCCCATT
TCTGCTTTTATTTTACTCAAAGCACAAATTTGAATAAATGATGATCCAAG
GATTCTTACTCATGGAATCTTTGGACTTAGTTTGAAGGTTTTATTGAATC
ATCGTGGTTCTAGTATGAATCTGAGGTTTCAATTGATTCATAGGGTCTTA
ACAAGAAAATTCCTAGCAATAATAAAGAAAACAAAAGTCAAGCTGCATTA
CATACAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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