CN188190

Overview
NameCN188190
Unique NameCN188190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB1_CLOTE (V-type ATP synthase beta chain 1 OS=Clostridium tetani GN=atpB1 PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.025e-85
Identity = 155/246 (63.01%), Postives = 192/246 (78.05%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGR+F+G G+P D GP I+PE  LDI+G  INP  R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++AAQI RQA ++              +  FA+VFAA+G+  E A+FF  DF + G+++R  LF+NLANDP IERI TPR+ALTTAEYLA+E G HVLVILTD+++Y +ALREVSAAR+EVPGRRGYPGY+YTDLA +YERAGRI+G++GSITQIPILTMP DD THP
Sbjct:   81 VSEDMLGRVFDGLGRPKDEGPRIIPEKRLDINGIPINPVARNYPSEFIQTGISAIDGLNTLVRGQKLPVFSGSGLPHAQLAAQIARQAKVLN------------SDSKFAVVFAAVGITFEEAEFFVDDFTKTGAIDRSVLFMNLANDPAIERIATPRMALTTAEYLAFEKGMHVLVILTDLTNYCEALREVSAARKEVPGRRGYPGYLYTDLATLYERAGRIKGKEGSITQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB1_METHJ (V-type ATP synthase beta chain 1 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpB1 PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.453e-85
Identity = 153/250 (61.20%), Postives = 191/250 (76.40%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PV  DMLGRI +G+GKP D GP I+PE  L+I+G++INP  R  P + IQTGISTID+ N++ RGQK+P+FS +GLPHNEIA QI RQA +             G ++ FA+VFAAMG+  E    F  +FE  G++E   +FLNLA+DP +ERIITPR+ALTTAEYLA+E   HVLVILTDM++Y +ALR++ AAREEVPGRRGYPGYMYTDLA +YERAG I+G+KGS+TQ+ ILTMP DDITHP
Sbjct:   75 IKMPVGKDMLGRILSGAGKPKDGGPDIVPEKRLEITGAAINPWARGSPRQFIQTGISTIDLTNTLVRGQKLPIFSGSGLPHNEIALQIARQAKV------------PGSDEQFAVVFAAMGITKEEENQFMAEFERTGALEHAVVFLNLADDPAVERIITPRLALTTAEYLAFELDYHVLVILTDMTNYCEALRQIGAAREEVPGRRGYPGYMYTDLASLYERAGIIKGKKGSVTQLSILTMPGDDITHP 312          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CLOBB (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=atpB PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.510e-85
Identity = 152/246 (61.79%), Postives = 194/246 (78.86%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGR+F+G G+P DNGP I+PE  +DI+G +INP  R +P E IQTG+S ID +N++ RGQK+P+FSAAGLPH E+AAQI RQA ++              +  FAIVFAA+G+  E AQFF+ +F+  G+++R  LF+NLA+DP IERI TPR+ALT AEYLAYE G  VLVI+TD+++YA+ALRE+SAAR+EVPGRRGYPGY+YTDL+ +YERAGR+ G++GSITQIPILTMP DD THP
Sbjct:   81 VSEDMLGRVFDGMGRPNDNGPDIIPEKRVDINGEAINPMARDFPSEFIQTGVSAIDGLNTLVRGQKLPVFSAAGLPHAELAAQIARQAKVLN------------SDSKFAIVFAAIGITFEEAQFFQDEFKRTGAIDRSVLFMNLASDPAIERIATPRMALTCAEYLAYEKGMQVLVIMTDITNYAEALREISAARKEVPGRRGYPGYLYTDLSTLYERAGRLRGKEGSITQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CLOBA (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=atpB PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.510e-85
Identity = 152/246 (61.79%), Postives = 194/246 (78.86%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGR+F+G G+P DNGP I+PE  +DI+G +INP  R +P E IQTG+S ID +N++ RGQK+P+FSAAGLPH E+AAQI RQA ++              +  FAIVFAA+G+  E AQFF+ +F+  G+++R  LF+NLA+DP IERI TPR+ALT AEYLAYE G  VLVI+TD+++YA+ALRE+SAAR+EVPGRRGYPGY+YTDL+ +YERAGR+ G++GSITQIPILTMP DD THP
Sbjct:   81 VSEDMLGRVFDGMGRPNDNGPDIIPEKRVDINGEAINPMARDFPSEFIQTGVSAIDGLNTLVRGQKLPVFSAAGLPHAELAAQIARQAKVLN------------SDSKFAIVFAAIGITFEEAQFFQDEFKRTGAIDRSVLFMNLASDPAIERIATPRMALTCAEYLAYEKGMQVLVIMTDITNYAEALREISAARKEVPGRRGYPGYLYTDLSTLYERAGRLRGKEGSITQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CENSY (V-type ATP synthase beta chain OS=Cenarchaeum symbiosum GN=atpB PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.510e-85
Identity = 149/250 (59.60%), Postives = 199/250 (79.60%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++ PVS ++LGRIF+G G+P D  P  + + ++DI+G ++NP +R YP++ IQTG+S ID + ++ RGQK+P+FS +G+ HN +AAQI RQA +V            G  D+FA+VFAA+GV    A++F+R  EE+G+++R  LFLNLANDP IERIITPR+ALT AEYLA++ G HVLVILTDM++YA+ALRE+SAAREEVPGR+GYPGY+YTDL+ IYERAGR+ GRKGS+TQ+PILTMP+DDITHP
Sbjct:   81 MEMPVSREVLGRIFDGLGRPKDKLPDPIADKFIDINGEAMNPEQREYPKDFIQTGVSAIDGIMTLVRGQKLPIFSGSGMSHNILAAQIARQASVV------------GTGDDFAVVFAAIGVQYSEAEYFRRSLEESGALKRSVLFLNLANDPAIERIITPRVALTVAEYLAFDLGMHVLVILTDMTNYAEALREISAAREEVPGRKGYPGYLYTDLSTIYERAGRLVGRKGSVTQVPILTMPSDDITHP 318          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_THEAC (V-type ATP synthase beta chain OS=Thermoplasma acidophilum GN=atpB PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.693e-85
Identity = 150/249 (60.24%), Postives = 192/249 (77.11%), Query Frame = 1
Query:    7 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            + P+S DMLGR+FNG G+PID GP I+ +  ++I+ ++INP  R  P E I+TGIS ID MN++ RGQK+P+FS +GLPHN++AAQI RQA ++   E            NFA+VF AMG+  E A +F   F E G++ R  +FLNL++DP++ERII PRIALTTAEYLA++ G H+LVILTDM++Y +ALRE+SAAREEVPGRRGYPGYMYTDL+ IYERAG+++G  GSITQIPILTMP DDITHP
Sbjct:   79 RLPISEDMLGRVFNGIGEPIDGGPEIIAKERMEITSNAINPYSREEPSEFIETGISAIDGMNTLVRGQKLPIFSGSGLPHNQLAAQIARQAKVLDSSE------------NFAVVFGAMGITSEEANYFTNQFRETGALSRSVMFLNLSSDPSMERIILPRIALTTAEYLAFQKGMHILVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLSTIYERAGKLKGNNGSITQIPILTMPGDDITHP 315          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_HYPBU (V-type ATP synthase beta chain OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=atpB PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.693e-85
Identity = 156/246 (63.41%), Postives = 191/246 (77.64%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS +MLGR+FNG G PID GPPI      DI+G  +NP+ R YPE+ IQTGIS ID MN++ RGQK+P+FS +GLPHN++A QI RQA            +  GEE  FA+VFAA+GV  + A FFKR FEE G+++R  LF+NLA++P   R+ITPR+ALT AE+LA++ G HVLVILTDM++Y +ALRE+SAAREEVPGR+GYPGYMY+DLA IYERAGR  GRKGSITQ+PILTMPNDDITHP
Sbjct:   90 VSDEMLGRVFNGLGDPIDGGPPITSGVRRDINGEPLNPAARAYPEDFIQTGISAIDGMNTMVRGQKLPIFSGSGLPHNKLAVQIARQA-----------TVRSGEE--FAVVFAAIGVMYDEAIFFKRFFEETGAIKRAALFINLADEPASVRLITPRVALTLAEHLAFDLGMHVLVILTDMTNYCEALREISAAREEVPGRQGYPGYMYSDLASIYERAGRAHGRKGSITQMPILTMPNDDITHP 322          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_THET8 (V-type ATP synthase beta chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=atpB PE=1 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.714e-84
Identity = 157/246 (63.82%), Postives = 191/246 (77.64%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS +MLGR FNG GKPID  PPI PE  L I+G  +NP  R  PE+ IQTGISTIDVMN++ RGQK+P+FS +GLP NEIAAQI RQA +     + D   E  +E+ FA+VFAAMG+      +F ++FE  G++ R  LFLN A+DPTIERI+TPR+ALT AEYLA+E   HVLVILTDM++Y +ALRE+ AAREE+PGRRGYPGYMYTDLA IYERAG +EG+KGS+TQIPIL+MP+DD THP
Sbjct:   84 VSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV-----RPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHP 324          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_THET2 (V-type ATP synthase beta chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=atpB PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.714e-84
Identity = 157/246 (63.82%), Postives = 191/246 (77.64%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS +MLGR FNG GKPID  PPI PE  L I+G  +NP  R  PE+ IQTGISTIDVMN++ RGQK+P+FS +GLP NEIAAQI RQA +     + D   E  +E+ FA+VFAAMG+      +F ++FE  G++ R  LFLN A+DPTIERI+TPR+ALT AEYLA+E   HVLVILTDM++Y +ALRE+ AAREE+PGRRGYPGYMYTDLA IYERAG +EG+KGS+TQIPIL+MP+DD THP
Sbjct:   84 VSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV-----RPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHP 324          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_DICTD (V-type ATP synthase beta chain OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=atpB PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.714e-84
Identity = 154/246 (62.60%), Postives = 188/246 (76.42%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +S ++LGR F+G G+P D GP I+P+  +DI+GS INP  R YP+E IQTGIS ID MN+I RGQKIP+FS AGLPH  +AAQI RQA L+             EE+ FA+VF AMG+  E A FF  +F   G++ER  LF+NLANDP IERI TPR ALT AEYLA++   HVLVIL+DM++YA+ALREVSA+R+EVPGRRGYPGY+YTDLA +YERAGRI+G+KGSIT +PILTMP DD THP
Sbjct:   81 LSPEILGRTFDGLGRPRDGGPEIIPQKRMDINGSPINPYSRAYPQEFIQTGISAIDGMNTIVRGQKIPIFSGAGLPHATLAAQIARQARLLN------------EEEKFAVVFGAMGITFEEANFFIENFRSTGALERTVLFINLANDPVIERIATPRFALTAAEYLAFDLDMHVLVILSDMTNYAEALREVSASRKEVPGRRGYPGYLYTDLATLYERAGRIKGKKGSITLLPILTMPEDDRTHP 314          
The following BLAST results are available for this feature:
BLAST of CN188190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATB1_CLOTE2.025e-8563.01V-type ATP synthase beta chain 1 OS=Clostridium te... [more]
VATB1_METHJ3.453e-8561.20V-type ATP synthase beta chain 1 OS=Methanospirill... [more]
VATB_CLOBB4.510e-8561.79V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBA4.510e-8561.79V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CENSY4.510e-8559.60V-type ATP synthase beta chain OS=Cenarchaeum symb... [more]
VATB_THEAC7.693e-8560.24V-type ATP synthase beta chain OS=Thermoplasma aci... [more]
VATB_HYPBU7.693e-8563.41V-type ATP synthase beta chain OS=Hyperthermus but... [more]
VATB_THET81.714e-8463.82V-type ATP synthase beta chain OS=Thermus thermoph... [more]
VATB_THET21.714e-8463.82V-type ATP synthase beta chain OS=Thermus thermoph... [more]
VATB_DICTD1.714e-8462.60V-type ATP synthase beta chain OS=Dictyoglomus tur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188190 ID=CN188190; Name=CN188190; organism=Citrus sinensis; type=EST; length=753bp
GAGGTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATGG
TTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCAGAGGCTTACT
TGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGAA
GAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTGC
TAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAATG
AAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAG
AAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTTTGCAATTGT
GTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTTTCAAACGTG
ATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTTCTGAATCTG
GCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTAC
TACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTCTTGTCATAC
TGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCC
CGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATATGTATACTGA
TTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTCGAAAAGGTT
CCATCACCCAAATTCCAATATTGACTATGCCAAATGACGATATTACACAT
CCC
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