CN188190

Overview
NameCN188190
Unique NameCN188190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CLOB6 (V-type ATP synthase beta chain OS=Clostridium botulinum (strain 657 / Type Ba4) GN=atpB PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.475e-83
Identity = 152/246 (61.79%), Postives = 188/246 (76.42%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGR+F+G G P D GP I+P+   DISG  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++              +  FA+VFAA+G   E AQ+F  DF + G+++R  LF+NLANDP IERI TPR+ALT AEYLA+E G HVLVI+TD+++Y +ALREVSAAR+EVPGRRGYPGY+YTDL+ IYERAGRI G++GSITQIPILTMP DD THP
Sbjct:   81 VSEDMLGRVFDGLGNPKDGGPKIIPDEKRDISGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQAKVLN------------SDSKFAVVFAAIGTTFEEAQYFIDDFTKTGAIDRAVLFINLANDPAIERIATPRMALTAAEYLAFEKGMHVLVIMTDITNYCEALREVSAARKEVPGRRGYPGYLYTDLSTIYERAGRILGKEGSITQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CLOBJ (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Kyoto / Type A2) GN=atpB PE=3 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.513e-83
Identity = 152/246 (61.79%), Postives = 188/246 (76.42%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGR+F+G G P D GP I+ +   DISG  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++K             +  FA+VFAA+G   E AQ+F  DF + G+++R  LF+NLANDP IERI TPR+ALT AEYLA+E G HVLVI+TD+++Y +ALREVSAAR+EVPGRRGYPGY+YTDL+ IYERAGRI G++GSITQIPILTMP DD THP
Sbjct:   81 VSEDMLGRVFDGLGNPKDGGPKIIADEKRDISGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQAKVLK------------SDSKFAVVFAAIGTTFEEAQYFIDDFTKTGAIDRAVLFINLANDPAIERIATPRMALTAAEYLAFEKGMHVLVIMTDITNYCEALREVSAARKEVPGRRGYPGYLYTDLSTIYERAGRILGKEGSITQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_PICTO (V-type ATP synthase beta chain OS=Picrophilus torridus GN=atpB PE=3 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.228e-82
Identity = 153/249 (61.45%), Postives = 190/249 (76.31%), Query Frame = 1
Query:    7 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            + PVS DMLGRIFNG G+PIDNGP I  +  LDI+GS+INP  R  P E +QTGISTID MN++  GQK+P+FS AGL HN +AAQI RQA            L+ GE  NF +VF A+G+  E A +F  +F+ +GS+    +FLNLA+DP+++RI+ PRIALTTAEYLAYE   ++LVILTDM++Y +ALRE+S+AR E+PGRRGYPGYMYTDL+ IYERAG+I GR GSITQIPILTMP DDIT+P
Sbjct:   79 RLPVSDDMLGRIFNGFGEPIDNGPKIYSKDKLDINGSAINPYSREEPSEFVQTGISTIDGMNTLVMGQKLPIFSGAGLSHNRLAAQIARQA----------KTLKGGE--NFGVVFGAIGITSEEANYFINEFQSSGSLSNSVIFLNLASDPSMDRIVLPRIALTTAEYLAYEKEMNMLVILTDMTNYCEALREISSARNEIPGRRGYPGYMYTDLSTIYERAGKIRGRNGSITQIPILTMPGDDITNP 315          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_DEIGD (V-type ATP synthase beta chain OS=Deinococcus geothermalis (strain DSM 11300) GN=atpB PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.604e-82
Identity = 147/246 (59.76%), Postives = 189/246 (76.83%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS +M+GR F+G G+PID  PP++ E  L+I+G  +NP+ R  PEE IQTGISTIDV  S+ RGQK+P+FS +GLPHNE+AAQI RQA +             G E +FA+VFAAMG+      FF ++FE  G++ R  LFLN A+DP +ER++TPR+ALTTAEYLA+E G HVLVILTDM++Y +ALRE+  AREE+PGRRG+PGYMYTDLA +YERAG ++G+ GS+TQIPIL+MP+DDITHP
Sbjct:   85 VSREMIGRRFDGLGRPIDGLPPVVAEKRLNINGEPMNPAARAKPEEFIQTGISTIDVNTSLIRGQKLPIFSGSGLPHNELAAQIARQAKV------------PGHEGDFAVVFAAMGLTQREVSFFTQEFERTGALARSVLFLNRADDPAVERLLTPRMALTTAEYLAFEHGYHVLVILTDMTNYCEALREIGGAREEIPGRRGFPGYMYTDLASLYERAGVVQGKPGSVTQIPILSMPDDDITHP 318          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_DEIDV (V-type ATP synthase beta chain OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=atpB PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.961e-82
Identity = 145/246 (58.94%), Postives = 188/246 (76.42%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS +M+GR F+G G+PID  P ++ E  L I+G ++NP+ R  PEE IQTGISTIDV  S+ RGQK+P+FS +GLPHNE+AAQI RQA +             G E +FA+VFAAMG+      FF ++FE  G++ R  LFLN A+DP +ER++TPR+ALTTAEYLA+E G HVLVILTD+++Y +ALRE+  AREE+PGRRG+PGYMYTDLA +YERAG +EG+ GS+TQ+PIL+MP+DDITHP
Sbjct:   84 VSKEMIGRRFDGLGRPIDGLPQVVAEQRLSINGQAMNPAARAKPEEFIQTGISTIDVQTSLIRGQKLPIFSGSGLPHNELAAQIARQAKV------------PGHEGDFAVVFAAMGLTQREVSFFTQEFERTGALARSVLFLNKADDPAVERLLTPRMALTTAEYLAFEHGYHVLVILTDLTNYCEALREIGGAREEIPGRRGFPGYMYTDLASLYERAGVVEGKPGSVTQVPILSMPDDDITHP 317          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CLOD6 (V-type ATP synthase beta chain OS=Clostridium difficile (strain 630) GN=atpB PE=3 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.358e-81
Identity = 144/246 (58.54%), Postives = 190/246 (77.24%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS D+LGR+F+G G+PID GP I+P+  LDI+G+ INP+ R YP E IQTG+S ID +N++ RGQK+P+FS +GLPH  +A QI RQA +             G +  FA+VFAA+G+  E A+FF  DF+  G+++R  +F+NLANDP +ER+ TPR+ALT AEYLA+E   HVLVI+TD+++YA+ALREVSAA++EVPGRRGYPGY+YTDLA +YERAG+++G +GSIT IPILTMP DD THP
Sbjct:   81 VSPDILGRVFSGMGRPIDGGPEIIPDKRLDINGAPINPAARDYPAEFIQTGVSAIDGLNTLVRGQKLPIFSGSGLPHANLAVQIARQAKV------------RGTDSKFAVVFAAVGITFEDAEFFISDFKATGAIDRSVVFVNLANDPAVERVSTPRMALTAAEYLAFEQDMHVLVIITDITNYAEALREVSAAKKEVPGRRGYPGYLYTDLATMYERAGKMKGHEGSITMIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_COPPD (V-type ATP synthase beta chain OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=atpB PE=3 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.774e-81
Identity = 150/246 (60.98%), Postives = 184/246 (74.80%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS  +LGR+F+G G+P+D  P    + Y+DI+G+ +NP  R YP E IQTGIS ID MN++ RGQK+P+FS +GLPH  +AAQI  QA ++              E+ FA+VFAAMG+  E A FF + F++ G++ER  LFLNLA+DPTIERI TPR AL  AEYLA+E   HVL ILTDM++Y +ALRE+SAAR EVPGRRGYPGYMYTDLA IYERAGRI+G+KGSITQIPILTMP DD THP
Sbjct:   80 VSEGILGRVFDGLGEPLDGKPQPFVDKYVDINGAPMNPVSREYPAEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHARLAAQIASQAKVLS------------SEEKFAVVFAAMGITFEEANFFIQSFQKTGAIERSVLFLNLADDPTIERIATPRFALAAAEYLAFEKDMHVLAILTDMTNYCEALREISAARREVPGRRGYPGYMYTDLASIYERAGRIKGKKGSITQIPILTMPEDDRTHP 313          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_DEIRA (V-type ATP synthase beta chain OS=Deinococcus radiodurans GN=atpB PE=3 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.316e-81
Identity = 144/246 (58.54%), Postives = 186/246 (75.61%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS +M+GR F+G G+PID  P ++ E  L + G  +NP+ R  PEE IQTGISTIDV  S+ RGQK+P+FS +GLPHNE+AAQI RQA +             G E +FA+VFAAMG+      FF ++FE  G++ R  LFLN A+DP +ER++TPR+ALTTAEYLA+E G HVLVILTD+++Y +ALRE+  AREE+PGRRG+PGYMYTDLA +YERAG +EG+ GS+TQ+PIL+MP+DDITHP
Sbjct:   84 VSKEMIGRRFDGLGRPIDGLPAVVAEQRLSVDGQPMNPAARAKPEEFIQTGISTIDVQTSLIRGQKLPIFSGSGLPHNELAAQIARQAKV------------PGHEGDFAVVFAAMGLTQREVSFFTQEFERTGALARSVLFLNKADDPAVERLLTPRMALTTAEYLAFEHGYHVLVILTDLTNYCEALREIGGAREEIPGRRGFPGYMYTDLASLYERAGVVEGKPGSVTQVPILSMPDDDITHP 317          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_SULTO (V-type ATP synthase beta chain OS=Sulfolobus tokodaii GN=atpB PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.160e-81
Identity = 148/250 (59.20%), Postives = 190/250 (76.00%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  +S +MLGRIFN  G+P+DNGPP++     +I+G  INP+ R YPEE IQTGIS ID +NS+ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+VFAA+GV  + A FF++ FEE G++ RV +F+ LANDP   +I+TP+ ALT AEYLA+E   HVL IL DM++Y +ALRE+SA+REEVPGR GYPGYMYTDLA IYERAG++ G+KGSITQ+PILTMPNDD+THP
Sbjct:   81 LEVKISEEMLGRIFNPLGEPLDNGPPVIGGEKRNINGDPINPATREYPEEFIQTGISAIDGLNSLLRGQKLPIFSGSGLPANTLAAQIAKQATV------------RGEESNFAVVFAAIGVRYDEALFFRKFFEETGAINRVAMFVTLANDPPSLKILTPKTALTLAEYLAFEKDMHVLAILIDMTNYCEALRELSASREEVPGRGGYPGYMYTDLATIYERAGKVIGKKGSITQMPILTMPNDDMTHP 318          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_IGNH4 (V-type ATP synthase beta chain OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=atpB PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.740e-81
Identity = 147/246 (59.76%), Postives = 187/246 (76.02%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGRI N  G+PID G PI      ++ G  INP  R YP+E I+TGIS ID MNS+ RGQK+P+FS +GLPHN++AAQI RQA +             GEE++FA+VFAA+G+  +   FFK+ FEE G++ R  +F++LAN+P + +I+TPR ALT AEYLA++   HVLVI+TDM++Y +ALRE+SA+REEVP R+GYPGYMYTDLA IYERAGR++G KGSITQ+PILTMPNDDITHP
Sbjct:   87 VSEDMLGRIMNALGEPIDGGAPIKAVEKRNVWGEPINPYAREYPDEFIETGISAIDGMNSLVRGQKLPIFSGSGLPHNKLAAQIARQATV------------RGEEESFAVVFAAVGIQYDELLFFKKAFEETGAISRTAMFVSLANEPAMMKIVTPRAALTLAEYLAFQKDMHVLVIITDMTNYCEALREISASREEVPSRQGYPGYMYTDLATIYERAGRVKGSKGSITQMPILTMPNDDITHP 320          
The following BLAST results are available for this feature:
BLAST of CN188190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATB_CLOB62.475e-8361.79V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBJ5.513e-8361.79V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_PICTO1.228e-8261.45V-type ATP synthase beta chain OS=Picrophilus torr... [more]
VATB_DEIGD1.604e-8259.76V-type ATP synthase beta chain OS=Deinococcus geot... [more]
VATB_DEIDV7.961e-8258.94V-type ATP synthase beta chain OS=Deinococcus dese... [more]
VATB_CLOD61.358e-8158.54V-type ATP synthase beta chain OS=Clostridium diff... [more]
VATB_COPPD1.774e-8160.98V-type ATP synthase beta chain OS=Coprothermobacte... [more]
VATB_DEIRA2.316e-8158.54V-type ATP synthase beta chain OS=Deinococcus radi... [more]
VATB_SULTO5.160e-8159.20V-type ATP synthase beta chain OS=Sulfolobus tokod... [more]
VATB_IGNH46.740e-8159.76V-type ATP synthase beta chain OS=Ignicoccus hospi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188190 ID=CN188190; Name=CN188190; organism=Citrus sinensis; type=EST; length=753bp
GAGGTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATGG
TTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCAGAGGCTTACT
TGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGAA
GAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTGC
TAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAATG
AAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAG
AAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTTTGCAATTGT
GTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTTTCAAACGTG
ATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTTCTGAATCTG
GCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTAC
TACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTCTTGTCATAC
TGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCC
CGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATATGTATACTGA
TTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTCGAAAAGGTT
CCATCACCCAAATTCCAATATTGACTATGCCAAATGACGATATTACACAT
CCC
back to top