CN188190 | Citrus Genome Database

Overview


Name	CN188190
Unique Name	CN188190
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	753

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_SULAC (V-type ATP synthase beta chain OS=Sulfolobus acidocaldarius GN=atpB PE=3 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.501e-80
Identity = 146/250 (58.40%), Postives = 188/250 (75.20%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  +S +MLGRIF   G+P+DNGP +L     DI+GS +NPS R YPEE IQTG+S ID + S+ RGQK+P+FS +GLP N++AAQI +QA +             GEE NFA+VFAA+G+  + A FF+R FEE G++ RV +F+ LANDP   +I+TP+ ALT AEYLAYE   H+L IL DM++Y +ALRE+SA++EEVPGR GYPGYMYTDLA  YERAG++ G+KGSITQ+PILTMPNDDITHP
Sbjct:   82 LEVKISEEMLGRIFTPLGEPLDNGPQVLSGEKRDINGSPLNPSVREYPEEFIQTGVSAIDGLTSLLRGQKLPIFSGSGLPANQLAAQIAKQATV------------RGEESNFAVVFAAIGIRYDEALFFRRFFEETGAINRVAMFVTLANDPPSLKILTPKTALTLAEYLAYEKDMHILAILIDMTNYCEALRELSASKEEVPGRGGYPGYMYTDLAVTYERAGKVRGKKGSITQMPILTMPNDDITHP 319

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_SULSO (V-type ATP synthase beta chain OS=Sulfolobus solfataricus GN=atpB PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.451e-80
Identity = 145/250 (58.00%), Postives = 188/250 (75.20%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+VFAA+G   + A FF++ FEE G++ RV + ++LAN+P + + +TP+ ALT AEYLA+E   HVL IL DM++Y +ALRE+SAAREEVPGR GYPGYMYTDLA IYERAG++ G+KGSITQ+PILTMPNDDITHP
Sbjct:   79 LEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVVFAAIGARYDDALFFRKFFEETGAINRVAMIVSLANEPPVMKTLTPKTALTLAEYLAFEQDMHVLAILIDMTNYCEALREISAAREEVPGRGGYPGYMYTDLATIYERAGKVIGKKGSITQMPILTMPNDDITHP 316

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_SULIY (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=atpB PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.451e-80
Identity = 145/250 (58.00%), Postives = 188/250 (75.20%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+VFAA+G   + A FF++ FEE G++ RV + ++LAN+P + + +TP+ ALT AEYLA+E   HVL IL DM++Y +ALRE+SAAREEVPGR GYPGYMYTDLA IYERAG++ G+KGSITQ+PILTMPNDDITHP
Sbjct:   79 LEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVVFAAIGARYDDALFFRKFFEETGAINRVAMIVSLANEPPVMKTLTPKTALTLAEYLAFEQDMHVLAILIDMTNYCEALREISAAREEVPGRGGYPGYMYTDLATIYERAGKVLGKKGSITQMPILTMPNDDITHP 316

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_SULIN (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=atpB PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.451e-80
Identity = 145/250 (58.00%), Postives = 188/250 (75.20%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+VFAA+G   + A FF++ FEE G++ RV + ++LAN+P + + +TP+ ALT AEYLA+E   HVL IL DM++Y +ALRE+SAAREEVPGR GYPGYMYTDLA IYERAG++ G+KGSITQ+PILTMPNDDITHP
Sbjct:   79 LEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVVFAAIGARYDDALFFRKFFEETGAINRVAMIVSLANEPPVMKTLTPKTALTLAEYLAFEQDMHVLAILIDMTNYCEALREISAAREEVPGRGGYPGYMYTDLATIYERAGKVLGKKGSITQMPILTMPNDDITHP 316

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_SULIM (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=atpB PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.451e-80
Identity = 145/250 (58.00%), Postives = 188/250 (75.20%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+VFAA+G   + A FF++ FEE G++ RV + ++LAN+P + + +TP+ ALT AEYLA+E   HVL IL DM++Y +ALRE+SAAREEVPGR GYPGYMYTDLA IYERAG++ G+KGSITQ+PILTMPNDDITHP
Sbjct:   79 LEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVVFAAIGARYDDALFFRKFFEETGAINRVAMIVSLANEPPVMKTLTPKTALTLAEYLAFEQDMHVLAILIDMTNYCEALREISAAREEVPGRGGYPGYMYTDLATIYERAGKVLGKKGSITQMPILTMPNDDITHP 316

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_SULIL (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=atpB PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.451e-80
Identity = 145/250 (58.00%), Postives = 188/250 (75.20%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+VFAA+G   + A FF++ FEE G++ RV + ++LAN+P + + +TP+ ALT AEYLA+E   HVL IL DM++Y +ALRE+SAAREEVPGR GYPGYMYTDLA IYERAG++ G+KGSITQ+PILTMPNDDITHP
Sbjct:   79 LEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVVFAAIGARYDDALFFRKFFEETGAINRVAMIVSLANEPPVMKTLTPKTALTLAEYLAFEQDMHVLAILIDMTNYCEALREISAAREEVPGRGGYPGYMYTDLATIYERAGKVLGKKGSITQMPILTMPNDDITHP 316

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_SULIK (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=atpB PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.451e-80
Identity = 145/250 (58.00%), Postives = 188/250 (75.20%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+VFAA+G   + A FF++ FEE G++ RV + ++LAN+P + + +TP+ ALT AEYLA+E   HVL IL DM++Y +ALRE+SAAREEVPGR GYPGYMYTDLA IYERAG++ G+KGSITQ+PILTMPNDDITHP
Sbjct:   79 LEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVVFAAIGARYDDALFFRKFFEETGAINRVAMIVSLANEPPVMKTLTPKTALTLAEYLAFEQDMHVLAILIDMTNYCEALREISAAREEVPGRGGYPGYMYTDLATIYERAGKVLGKKGSITQMPILTMPNDDITHP 316

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_SULIA (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain M.16.27) GN=atpB PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.451e-80
Identity = 145/250 (58.00%), Postives = 188/250 (75.20%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  +S +MLGRIFN  G  +DNGPP++     DI+GS +NP+ R YPEE IQTGIS ID +N++ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+VFAA+G   + A FF++ FEE G++ RV + ++LAN+P + + +TP+ ALT AEYLA+E   HVL IL DM++Y +ALRE+SAAREEVPGR GYPGYMYTDLA IYERAG++ G+KGSITQ+PILTMPNDDITHP
Sbjct:   79 LEVKISEEMLGRIFNPLGDSLDNGPPVIKGEKRDINGSPLNPAAREYPEEFIQTGISAIDGLNALLRGQKLPIFSGSGLPANMLAAQIAKQATV------------RGEESNFAVVFAAIGARYDDALFFRKFFEETGAINRVAMIVSLANEPPVMKTLTPKTALTLAEYLAFEQDMHVLAILIDMTNYCEALREISAAREEVPGRGGYPGYMYTDLATIYERAGKVLGKKGSITQMPILTMPNDDITHP 316

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METS5 (V-type ATP synthase beta chain OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=atpB PE=3 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.830e-79
Identity = 144/250 (57.60%), Postives = 187/250 (74.80%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  +S +MLGRIFN  G P+DNGP ++     DI+G  +NP+ R YPEE IQTGIS ID +NS+ RGQK+P+FS +GLP N +AAQI +QA +             GEE NFA+VF A+GV  + A FF++ FEE G++ RV L ++LAN+P + + +TP+ ALT AEYLA+E   HVL IL DM++Y +ALRE+SA++EEVPGR GYPGYMYTDLAQ YERAG++ G+KGSITQ+PILTMPNDDITHP
Sbjct:   82 LEVKISEEMLGRIFNPLGDPLDNGPMVIKGEKRDINGEPLNPAIRDYPEEFIQTGISAIDGLNSLLRGQKLPIFSGSGLPANILAAQIAKQATV------------RGEESNFAVVFGAIGVRYDEALFFRKFFEETGAINRVALIMSLANEPPVMKTLTPKTALTLAEYLAFEQDMHVLAILIDMTNYCEALREISASKEEVPGRGGYPGYMYTDLAQTYERAGKVIGKKGSITQMPILTMPNDDITHP 319

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_HALOH (V-type ATP synthase beta chain OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=atpB PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.554e-77
Identity = 138/246 (56.10%), Postives = 183/246 (74.39%), Query Frame = 1

Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +S D+LGR+FNG G+PID G  +      +I+G++INP  R YP   IQTG+S ID + ++ RGQK+P+FS  GLPHN++AAQI RQA L              + ++FA+VF AMG+  + A FF   FE++G ++ V +FLNLA+DP +ERII PRI LT AEYLA+E G H+LVI+TDM++Y +ALRE+S+ REEVP R+GYPGY+Y+DLA +YERAG I+G +GSITQ+PILTMPNDDITHP
Sbjct:   82 LSRDILGRVFNGVGEPIDGGGEVYSNKKYNINGNAINPYSRQYPRNYIQTGVSAIDGLITLIRGQKLPIFSGNGLPHNQLAAQIARQARL------------GDDNEDFAVVFVAMGIKHDDANFFINSFEKSGVLQNVVVFLNLADDPAVERIIAPRIGLTAAEYLAFEEGMHILVIMTDMTNYCEALRELSSRREEVPSRKGYPGYLYSDLASLYERAGMIKGERGSITQLPILTMPNDDITHP 315

The following BLAST results are available for this feature:

BLAST of CN188190 vs. ExPASy Swiss-Prot

BLAST of CN188190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
VATB_SULAC	1.501e-80	58.40	V-type ATP synthase beta chain OS=Sulfolobus acido...	[more]
VATB_SULSO	7.451e-80	58.00	V-type ATP synthase beta chain OS=Sulfolobus solfa...	[more]
VATB_SULIY	7.451e-80	58.00	V-type ATP synthase beta chain OS=Sulfolobus islan...	[more]
VATB_SULIN	7.451e-80	58.00	V-type ATP synthase beta chain OS=Sulfolobus islan...	[more]
VATB_SULIM	7.451e-80	58.00	V-type ATP synthase beta chain OS=Sulfolobus islan...	[more]
VATB_SULIL	7.451e-80	58.00	V-type ATP synthase beta chain OS=Sulfolobus islan...	[more]
VATB_SULIK	7.451e-80	58.00	V-type ATP synthase beta chain OS=Sulfolobus islan...	[more]
VATB_SULIA	7.451e-80	58.00	V-type ATP synthase beta chain OS=Sulfolobus islan...	[more]
VATB_METS5	4.830e-79	57.60	V-type ATP synthase beta chain OS=Metallosphaera s...	[more]
VATB_HALOH	1.554e-77	56.10	V-type ATP synthase beta chain OS=Halothermothrix ...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS05_0005K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188190 ID=CN188190; Name=CN188190; organism=Citrus sinensis; type=EST; length=753bp
GAGGTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATGG
TTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCAGAGGCTTACT
TGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGAA
GAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTGC
TAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAATG
AAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAG
AAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTTTGCAATTGT
GTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTTTCAAACGTG
ATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTTCTGAATCTG
GCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTAC
TACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTCTTGTCATAC
TGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCC
CGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATATGTATACTGA
TTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTCGAAAAGGTT
CCATCACCCAAATTCCAATATTGACTATGCCAAATGACGATATTACACAT
CCC