CN188190 | Citrus Genome Database

Overview


Name	CN188190
Unique Name	CN188190
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	753

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB1_HUMAN (V-type proton ATPase subunit B, kidney isoform OS=Homo sapiens GN=ATP6V1B1 PE=1 SV=3)

HSP 1 Score: 404.831 bits (1039), Expect = 2.537e-112
Identity = 202/250 (80.80%), Postives = 222/250 (88.80%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++TPVS DMLGR+FNGSGKPID GP ++ E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+       + D  +DNFAIVFAAMGVNMETA+FFK DFE+NG+M  V LFLNLANDPTIERIITPR+ALTTAE+LAY+C KHVLVILTDMSSYA+ALREVSAAREEVPGRRG+PGYMYTDLA IYERAGR+EGR GSITQIPILTMPNDDITHP
Sbjct:  113 LRTPVSEDMLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHSRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK----SKAVLDYHDDNFAIVFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHP 358

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_SCHPO (V-type proton ATPase subunit B OS=Schizosaccharomyces pombe GN=vma2 PE=1 SV=2)

HSP 1 Score: 404.445 bits (1038), Expect = 3.314e-112
Identity = 202/250 (80.80%), Postives = 223/250 (89.20%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++ PVS DMLGR+FNGSG PID GP +L E YLDI+GS INP  R YPEEMIQTGIS+ID +NSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVKR  K    + DG EDNF+IVFAAMGVN+ETA+FF+RDFEENGS ERVTLFLNLANDPTIERIITPR+AL+ +E+LAY+  KHVL ILTDM+SYADALREVSAAREEVPGRRGYPGYMYTDL+ IYERAGR+EGR GSITQIPILTMPNDDITHP
Sbjct:   96 MRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPTKD---VHDGHEDNFSIVFAAMGVNLETARFFQRDFEENGSFERVTLFLNLANDPTIERIITPRLALSASEFLAYQTEKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHP 342

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB1_BOVIN (V-type proton ATPase subunit B, kidney isoform OS=Bos taurus GN=ATP6V1B1 PE=1 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 3.314e-112
Identity = 201/250 (80.40%), Postives = 223/250 (89.20%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++TPVS DMLGR+FNGSGKPID GP ++ E +LDI+G  INP +R YPEEMI+TGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+       + D  +DNFAIVFAAMGVNMETA+FFK DFE+NG+M  V LFLNLANDPTIERIITPR+ALTTAE+LAY+C KHVLVILTDMSSYA+ALREVSAAREEVPGRRG+PGYMYTDLA IYERAGR+EGR GSITQIPILTMPNDDITHP
Sbjct:  113 LRTPVSEDMLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHDRIYPEEMIETGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK----SKAVLDYHDDNFAIVFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHP 358

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CAEBR (Probable V-type proton ATPase subunit B OS=Caenorhabditis briggsae GN=vha-12 PE=3 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 4.328e-112
Identity = 203/250 (81.20%), Postives = 221/250 (88.40%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++TPVS DMLGRIFNGSGKPID GPP+L E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQI RQ GLV+  ++        E+ NFAIVFAAMGVNMETA+FFK+DFEENGSME V LFLNLANDPTIERIITPRIALT AE+LAY+C KHVLV+LTDMSSYA+ALREVSAAREEVPGRRG+PGYMYTDLA IYERAGR+EGR GSITQIPILTMPNDDITHP
Sbjct:  101 LRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIVRQGGLVQLPDRPH------EQTNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRIALTAAEFLAYQCSKHVLVVLTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRDGSITQIPILTMPNDDITHP 344

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CAEEL (Probable V-type proton ATPase subunit B OS=Caenorhabditis elegans GN=vha-12 PE=2 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.259e-111
Identity = 202/250 (80.80%), Postives = 222/250 (88.80%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++TPVS DMLGRIFNGSGKPID GPP+L E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSA+GLPHNEIAAQI RQ GLV+  ++        E+ NFAIVFAAMGVNMETA+FFK+DFEENGSME V LFLNLANDPTIERIITPRIALT+AE+LAY+C KHVLV+LTDMSSYA+ALREVSAAREEVPGRRG+PGYMYTDLA IYERAGR+EGR GSITQIPILTMPNDDITHP
Sbjct:  101 LRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIAAQIVRQGGLVQLPDRPH------EQTNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRIALTSAEFLAYQCKKHVLVVLTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRDGSITQIPILTMPNDDITHP 344

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_YEAST (V-type proton ATPase subunit B OS=Saccharomyces cerevisiae GN=VMA2 PE=1 SV=2)

HSP 1 Score: 402.134 bits (1032), Expect = 1.645e-111
Identity = 198/250 (79.20%), Postives = 222/250 (88.80%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++ PVS DMLGRIF+GSG+PIDNGP +  E YLDI+GS INP  R YPEEMI TG+S ID MNSIARGQKIP+FSA+GLPHNEIAAQICRQAGLV+  +     + DG E+NF+IVFAAMGVN+ETA+FFK+DFEENGS+ER +LFLNLANDPTIERIITPR+ALTTAEYLAY+  +HVL ILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDL+ IYERAGR+EGR GSITQIPILTMPNDDITHP
Sbjct:  100 LRIPVSEDMLGRIFDGSGRPIDNGPKVFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRPTKD----VHDGHEENFSIVFAAMGVNLETARFFKQDFEENGSLERTSLFLNLANDPTIERIITPRLALTTAEYLAYQTERHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHP 345

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CANTR (V-type proton ATPase subunit B OS=Candida tropicalis GN=VMA2 PE=3 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 8.162e-111
Identity = 197/250 (78.80%), Postives = 221/250 (88.40%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS DMLGRIF+GSG+PID GP I  E YLDI+GS INP  R YPEEMI TG+S ID MNSIARGQKIP+FSA+GLPHNEIAAQICRQAGLV+  +     + DG E+NF+IVFAAMGVN+ET++FFK+DFEENGS+ER TLFLNLANDPTIERIITPR+ALTTAE+LAY+  +HVL ILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDL+ IYERAGR+EGR GSITQ+PILTMPNDDITHP
Sbjct:  100 LKIPVSEDMLGRIFDGSGRPIDKGPKIFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVRPTKD----VHDGHEENFSIVFAAMGVNLETSRFFKQDFEENGSLERTTLFLNLANDPTIERIITPRLALTTAEFLAYQTERHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQVPILTMPNDDITHP 345

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_NEUCR (V-type proton ATPase subunit B OS=Neurospora crassa GN=vma-2 PE=3 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 4.479e-109
Identity = 196/250 (78.40%), Postives = 217/250 (86.80%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K  VS DMLGRIF+GSG+ ID GP +L E YLDI+GS INP  R YP+EMI TGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLV+R   T+  + DG E+NF+IVF AMGVN+ETA+FF RDFEENGS+ R TLFLNLANDPTIERIITPR+ALTTAEY AY+  KHVLVILTD+SSY DALREVSAAREEVPGRRG+PGYMYTDL+ IYERAGR+ GR GSITQIPILTMPNDDITHP
Sbjct:   90 LKLGVSEDMLGRIFDGSGRAIDKGPKVLAEEYLDINGSPINPYAREYPQEMISTGISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVQRQGITNKGVHDGHEENFSIVFGAMGVNLETARFFTRDFEENGSLGRTTLFLNLANDPTIERIITPRLALTTAEYYAYQLEKHVLVILTDLSSYCDALREVSAAREEVPGRRGFPGYMYTDLSTIYERAGRVAGRNGSITQIPILTMPNDDITHP 339

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_ENCCU (V-type proton ATPase subunit B OS=Encephalitozoon cuniculi GN=VMA2 PE=1 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 1.103e-107
Identity = 196/250 (78.40%), Postives = 216/250 (86.40%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K  +S D+LGRIFNGSG+ ID GP I+PE YLDI G  +NP  R YPEEMIQTGIS+IDVMNSIARGQKIP+FSA+GLPHNEIAAQICRQAGLVKR +  D+      +DNFAIVFAAMGVN+ETA FF+  FE +GS+ R  LFLNLANDPTIERIITPR+ALT AEYLAYE  KHVLVI+TDMSSYADALREVSAAREEVPGRRGYPGYMYTDL+ IYERAGR+EGR GSITQIPILTMPNDDITHP
Sbjct:   85 MKMGMSEDVLGRIFNGSGRVIDGGPKIIPEDYLDIQGQPLNPYARIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVKRKDSIDS-----SDDNFAIVFAAMGVNVETANFFRNSFEASGSIGRTALFLNLANDPTIERIITPRLALTAAEYLAYEREKHVLVIMTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRLEGRNGSITQIPILTMPNDDITHP 329

[Close]

BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_PLAFA (V-type proton ATPase subunit B OS=Plasmodium falciparum GN=VAPB PE=2 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.441e-107
Identity = 194/250 (77.60%), Postives = 217/250 (86.80%), Query Frame = 1

Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K P+S +MLGR+FNGSGKPID GP IL + YLDI+G+ INP  R YP+EMIQTGISTIDVMNSI RGQKIPLFSAAGLPHNEI AQICRQA LV+  +  D+      +DNFA+VF AMGVNMETA++F++DFEENG MERV LFLNLANDPTIERI+TPRIALTTAEYLA+E   HV VILTDMSSYADALREVS+AREEVPGRRGYPGYMY+DL+ IYERAGR+EGR GSITQ PILTMPNDDITHP
Sbjct:  104 LKMPMSDEMLGRVFNGSGKPIDKGPNILADDYLDINGNPINPQCRVYPKEMIQTGISTIDVMNSIVRGQKIPLFSAAGLPHNEIGAQICRQASLVQGKDVLDH-----SDDNFAVVFGAMGVNMETARYFRQDFEENGKMERVCLFLNLANDPTIERILTPRIALTTAEYLAFEKEMHVFVILTDMSSYADALREVSSAREEVPGRRGYPGYMYSDLSTIYERAGRVEGRNGSITQFPILTMPNDDITHP 348

The following BLAST results are available for this feature:

BLAST of CN188190 vs. ExPASy Swiss-Prot

BLAST of CN188190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
VATB1_HUMAN	2.537e-112	80.80	V-type proton ATPase subunit B, kidney isoform OS=...	[more]
VATB_SCHPO	3.314e-112	80.80	V-type proton ATPase subunit B OS=Schizosaccharomy...	[more]
VATB1_BOVIN	3.314e-112	80.40	V-type proton ATPase subunit B, kidney isoform OS=...	[more]
VATB_CAEBR	4.328e-112	81.20	Probable V-type proton ATPase subunit B OS=Caenorh...	[more]
VATB_CAEEL	1.259e-111	80.80	Probable V-type proton ATPase subunit B OS=Caenorh...	[more]
VATB_YEAST	1.645e-111	79.20	V-type proton ATPase subunit B OS=Saccharomyces ce...	[more]
VATB_CANTR	8.162e-111	78.80	V-type proton ATPase subunit B OS=Candida tropical...	[more]
VATB_NEUCR	4.479e-109	78.40	V-type proton ATPase subunit B OS=Neurospora crass...	[more]
VATB_ENCCU	1.103e-107	78.40	V-type proton ATPase subunit B OS=Encephalitozoon ...	[more]
VATB_PLAFA	1.441e-107	77.60	V-type proton ATPase subunit B OS=Plasmodium falci...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS05_0005K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188190 ID=CN188190; Name=CN188190; organism=Citrus sinensis; type=EST; length=753bp
GAGGTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATGG
TTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCAGAGGCTTACT
TGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGAA
GAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTGC
TAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAATG
AAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAG
AAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTTTGCAATTGT
GTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTTTCAAACGTG
ATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTTCTGAATCTG
GCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTAC
TACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTCTTGTCATAC
TGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCC
CGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATATGTATACTGA
TTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTCGAAAAGGTT
CCATCACCCAAATTCCAATATTGACTATGCCAAATGACGATATTACACAT
CCC