CN188190

Overview
NameCN188190
Unique NameCN188190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METS3 (V-type ATP synthase beta chain OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=atpB PE=3 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.108e-91
Identity = 161/249 (64.66%), Postives = 201/249 (80.72%), Query Frame = 1 
Query:    7 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            K  VS DM+GR+FNG GKPID GP I+P+  LDI+GS +NP+ R +PEE IQTGISTID MN++ RGQK+P+FS +GLPHNE+AAQI RQA ++            G++  FA++FAAMG+  E A FF RDFE  G++E+VT+F+NLA+DP IERI+TP++ALTTAEY A+  G  VLVILTDM++Y +ALRE+SAAR+EVPGRRGYPGYMYTDLA IYERAGRI+G++GSITQ+PIL MP DDITHP
Sbjct:   83 KIGVSRDMMGRMFNGIGKPIDGGPEIIPDEELDINGSPMNPASREFPEEFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVL------------GDDAEFAVIFAAMGITHEEANFFMRDFERTGALEKVTVFMNLADDPAIERILTPKMALTTAEYFAFTLGMQVLVILTDMTNYCEALREISAARDEVPGRRGYPGYMYTDLANIYERAGRIDGKEGSITQMPILVMPQDDITHP 319
[Close]
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_STRPZ (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=atpB PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.212e-91
Identity = 161/246 (65.45%), Postives = 196/246 (79.67%), Query Frame = 1 
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GRIF+G G+PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP
Sbjct:   83 VSEDMVGRIFDGMGQPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHP 316
[Close]
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_STRPG (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=atpB PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.212e-91
Identity = 161/246 (65.45%), Postives = 196/246 (79.67%), Query Frame = 1 
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GRIF+G G+PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP
Sbjct:   83 VSEDMVGRIFDGMGQPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHP 316
[Close]
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_STRPF (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=atpB PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.212e-91
Identity = 161/246 (65.45%), Postives = 196/246 (79.67%), Query Frame = 1 
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GRIF+G G+PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP
Sbjct:   83 VSEDMVGRIFDGMGQPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHP 316
[Close]
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_STRPD (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=atpB PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.212e-91
Identity = 161/246 (65.45%), Postives = 196/246 (79.67%), Query Frame = 1 
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GRIF+G G+PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP
Sbjct:   83 VSEDMVGRIFDGMGQPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHP 316
[Close]
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_STRPC (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=atpB PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.212e-91
Identity = 161/246 (65.45%), Postives = 196/246 (79.67%), Query Frame = 1 
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GRIF+G G+PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP
Sbjct:   83 VSEDMVGRIFDGMGQPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHP 316
[Close]
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_STRPB (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=atpB PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.212e-91
Identity = 161/246 (65.45%), Postives = 196/246 (79.67%), Query Frame = 1 
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GRIF+G G+PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP
Sbjct:   83 VSEDMVGRIFDGMGQPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHP 316
[Close]
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_STRP8 (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M18 GN=atpB PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.212e-91
Identity = 161/246 (65.45%), Postives = 196/246 (79.67%), Query Frame = 1 
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GRIF+G G+PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP
Sbjct:   83 VSEDMVGRIFDGMGQPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHP 316
[Close]
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_STRP6 (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M6 GN=atpB PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.212e-91
Identity = 161/246 (65.45%), Postives = 196/246 (79.67%), Query Frame = 1 
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GRIF+G G+PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP
Sbjct:   83 VSEDMVGRIFDGMGQPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHP 316
[Close]
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_STRP3 (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M3 GN=atpB PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.212e-91
Identity = 161/246 (65.45%), Postives = 196/246 (79.67%), Query Frame = 1 
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GRIF+G G+PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+AAQI RQA ++              +DNFA+VFAAMG+  E A+FF  D  E G+++R  LF+NLANDP IERI TPRIALTTAEYLAYE G HVLVI+TDM++Y +ALREVSAAR EVPGRRGYPGY+YT+L+ +YERAGR+ G+KGS+TQIPILTMP DDITHP
Sbjct:   83 VSEDMVGRIFDGMGQPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELAAQIARQATVLN------------SDDNFAVVFAAMGITFEEAEFFMNDLRETGAIDRSVLFINLANDPAIERIATPRIALTTAEYLAYEKGMHVLVIMTDMTNYCEALREVSAARREVPGRRGYPGYLYTNLSTLYERAGRLIGKKGSVTQIPILTMPEDDITHP 316
The following BLAST results are available for this feature:
BLAST of CN188190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATB_METS31.108e-9164.66V-type ATP synthase beta chain OS=Methanobrevibact... [more]
VATB_STRPZ4.212e-9165.45V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPG4.212e-9165.45V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPF4.212e-9165.45V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPD4.212e-9165.45V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPC4.212e-9165.45V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRPB4.212e-9165.45V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRP84.212e-9165.45V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRP64.212e-9165.45V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_STRP34.212e-9165.45V-type ATP synthase beta chain OS=Streptococcus py... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188190 ID=CN188190; Name=CN188190; organism=Citrus sinensis; type=EST; length=753bp
GAGGTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATGG
TTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCAGAGGCTTACT
TGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGAA
GAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTGC
TAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAATG
AAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAG
AAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTTTGCAATTGT
GTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTTTCAAACGTG
ATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTTCTGAATCTG
GCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTAC
TACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTCTTGTCATAC
TGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCC
CGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATATGTATACTGA
TTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTCGAAAAGGTT
CCATCACCCAAATTCCAATATTGACTATGCCAAATGACGATATTACACAT
CCC
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