CN188190

Overview
NameCN188190
Unique NameCN188190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB2_METHJ (V-type ATP synthase beta chain 2 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpB2 PE=3 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.656e-87
Identity = 160/246 (65.04%), Postives = 192/246 (78.05%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGR+ +G G+P D GP I+PEA LDI+G  INP  R  P E IQTGIS ID +N++ RGQK+P+FS AGLP N++AAQI +QA ++            GE +NFA+VFAAMG+  + A FF ++FEE+G++ERV  FLNLA+DPTIERI TPR ALT AE+LAY    HVLVILTDM++Y DALRE+S AREE+PGRRGYPGYMYTDLA IYERAGRI+G  GSITQIPILTMP+DDITHP
Sbjct:   87 VSYDMLGRVLDGVGRPRDGGPEIIPEARLDIAGMPINPYSRDKPAEFIQTGISAIDALNTLVRGQKLPIFSGAGLPANQLAAQIAKQAKVL------------GEGENFAVVFAAMGITYKEASFFMKEFEESGALERVVFFLNLADDPTIERIATPRCALTAAEFLAYTHNLHVLVILTDMTNYCDALREISTAREEIPGRRGYPGYMYTDLATIYERAGRIKGCTGSITQIPILTMPDDDITHP 320          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METAC (V-type ATP synthase beta chain OS=Methanosarcina acetivorans GN=atpB PE=3 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.163e-87
Identity = 156/250 (62.40%), Postives = 196/250 (78.40%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K P S+D+LGRI +GSG P D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA QI RQA +             G E  FA+VFAAMG+  E AQ+F  DFE+ G++ER  +FLNLA+DP +ERI+TPR+ALT AEYLAYE G HVLVILTD+++YA+ALR++ AAR EVPGRRGYPGYMYTDLA +YERAG ++G KGS+TQIPIL+MP DDITHP
Sbjct:   76 LKLPASIDLLGRILSGSGDPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASV------------PGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHP 313          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_HALLT (V-type ATP synthase beta chain OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=atpB PE=3 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.825e-87
Identity = 154/250 (61.60%), Postives = 199/250 (79.60%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PV+ D+LGR+ +GSG+PID+GP I+PE   DI G++INP  R YPEE I+TG+S ID MN++ RGQK+P+FS++G PH+++A QI RQA + +  E  D+  E+G E  FA++F AMG+  E A  F +DFE  G++ER  +F+NLA+DP +ER +TPR+ LTTAEYLA+E   HVLVILTDM++Y +ALRE+ AAREEVPGRRGYPGYMYTDLAQ+YERAGRI+GR GS+TQIPILTMP DD THP
Sbjct:   75 MKMPVTEDLLGRVLDGSGRPIDDGPEIVPEERQDIVGAAINPYSREYPEEFIETGVSAIDGMNTLVRGQKLPIFSSSGQPHSQLAMQIARQASVPEEEEGGDD--EEGSE--FAVIFGAMGITAEEANEFMQDFERTGALERSVVFMNLADDPAVERTVTPRMVLTTAEYLAFEKDYHVLVILTDMTNYCEALREIGAAREEVPGRRGYPGYMYTDLAQLYERAGRIQGRDGSVTQIPILTMPGDDDTHP 320          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CLONN (V-type ATP synthase beta chain OS=Clostridium novyi (strain NT) GN=atpB PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.690e-87
Identity = 155/246 (63.01%), Postives = 193/246 (78.46%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +S DMLGR+F+G G+P D GP I+PE   DI+G  +NP  R YP E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++            G +  FA+VFAAMG+  E AQFF +DF + GS++R  LF+NLANDP +ERI TPRIALTTAE+LAYE G HVLVI+TDM++YA+ALREVSAAR+EVPGRRGYPGY+YTDL+ +YERAGR++G+ GSITQIPILTMP DD THP
Sbjct:   81 LSEDMLGRVFDGMGRPKDGGPKIIPEERRDINGEPLNPFARDYPSEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQAKVL------------GSDSKFAVVFAAMGITFEEAQFFIQDFTKTGSIDRTVLFMNLANDPAVERIATPRIALTTAEFLAYEKGMHVLVIMTDMTNYAEALREVSAARKEVPGRRGYPGYLYTDLSTLYERAGRVKGKPGSITQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_THEPX (V-type ATP synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=atpB PE=3 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.819e-87
Identity = 157/250 (62.80%), Postives = 194/250 (77.60%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  VS+DMLGR+F+G G+P D GP I+PE  LDI+G+ INP+ R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++AAQI RQA ++            G +  FA+VFAAMG+  E A +F  DF   G+++R  LF+NLANDP IERI TPR+ALT AE+LAYE   HVLVI+TDM++Y +ALREVSAAR+EVPGRRGYPGY+YTDLA IYERAGRI+GRKGSITQIPILTMP DD THP
Sbjct:   77 IELGVSIDMLGRVFDGLGRPRDKGPMIIPEKRLDINGNPINPTARDYPSEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHAQLAAQIARQAKVL------------GTDSKFAVVFAAMGITFEEADYFISDFRRTGAIDRTVLFINLANDPAIERIATPRMALTCAEFLAYEKEMHVLVIMTDMTNYCEALREVSAARKEVPGRRGYPGYLYTDLATIYERAGRIKGRKGSITQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_THEP3 (V-type ATP synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=atpB PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.293e-87
Identity = 157/250 (62.80%), Postives = 194/250 (77.60%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++  VS+DMLGR+F+G G+P D GP I+PE  LDI+G+ INP+ R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++AAQI RQA ++            G +  FA+VFAAMG+  E A +F  DF   G+++R  LF+NLANDP IERI TPR+ALT AE+LAYE   HVLVI+TDM++Y +ALREVSAAR+EVPGRRGYPGY+YTDLA IYERAGRI+GRKGSITQIPILTMP DD THP
Sbjct:   77 IELGVSIDMLGRVFDGLGRPRDKGPMIIPEKRLDINGNPINPTARDYPSEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHAQLAAQIARQAKVL------------GSDSKFAVVFAAMGITFEEADYFISDFRRTGAIDRSVLFINLANDPAIERIATPRMALTCAEFLAYEKEMHVLVIMTDMTNYCEALREVSAARKEVPGRRGYPGYLYTDLATIYERAGRIKGRKGSITQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_NATPD (V-type ATP synthase beta chain OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=atpB PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 8.219e-87
Identity = 155/250 (62.00%), Postives = 197/250 (78.80%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++ P++ ++LGR+ +GSG+PID GP I P+   +I G++INP+ R YPEE IQTG+S ID MN++ RGQK+P+FS +GLPHNE+A QI RQA + +     D   E G E  FA++F AMG+  E A  F  DFE  G++ER  +F+NLA+DP +ER +TPR+ALTTAEYLA+E G HVLVILTDM++Y +ALRE+ AAREEVPGRRGYPGYMYTDLAQ+YERAGRIEGR+GS+TQIPILTMP DD THP
Sbjct:   76 LQMPLTEELLGRVLSGSGEPIDGGPEIEPDEEREIVGAAINPTAREYPEEFIQTGVSAIDGMNTLIRGQKLPIFSGSGLPHNELALQIARQASVPEEESGDD---EAGSE--FAVIFGAMGITQEEANEFMDDFERTGALERSVVFMNLADDPAVERTVTPRMALTTAEYLAFEEGYHVLVILTDMTNYCEALREIGAAREEVPGRRGYPGYMYTDLAQLYERAGRIEGREGSVTQIPILTMPGDDDTHP 320          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METVS (V-type ATP synthase beta chain OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=atpB PE=3 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.402e-86
Identity = 154/249 (61.85%), Postives = 195/249 (78.31%), Query Frame = 1
Query:    7 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            K  VS DMLGRIFNG+GKP+D GP I+ E  +DI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN +AAQI RQA +             GE + FA+VFAAMG+  E + +F  +F++ G++E+  +F+NLA+DP IERIITPRIALTTAEYLAYE G HVLVILTD+++Y +ALRE++AAR EVPGRRGYPGYMYTDLA +YERAGR++G++G++TQIPILTMP+DDITHP
Sbjct:   83 KIGVSKDMLGRIFNGAGKPLDGGPEIIAEKKVDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNMLAAQIARQAKV------------RGEGEQFAVVFAAMGITSEESNYFMDEFKKTGALEKAVVFINLADDPAIERIITPRIALTTAEYLAYEKGMHVLVILTDLTNYCEALREIAAARNEVPGRRGYPGYMYTDLASLYERAGRVKGKEGTVTQIPILTMPHDDITHP 319          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METM7 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=atpB PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.831e-86
Identity = 154/249 (61.85%), Postives = 195/249 (78.31%), Query Frame = 1
Query:    7 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN++A QI RQA +             GE + FA+VFAAMG+  E + +F  +F++ G++E+  +F+NLA+DP IERI+TPRIALTTAEYLAYE G HVLVILTD+++Y +ALRE++AAR EVPGRRGYPGYMYTDLA +YERAGR++GR+G++TQIPILTMP+DDITHP
Sbjct:   83 KIGVSYDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQAKV------------RGEGEQFAVVFAAMGITGEESNYFMDEFKKTGALEKAVVFINLADDPAIERILTPRIALTTAEYLAYEKGMHVLVILTDLTNYCEALREIAAARNEVPGRRGYPGYMYTDLACLYERAGRVKGREGTVTQIPILTMPDDDITHP 319          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METM6 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=atpB PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.831e-86
Identity = 154/249 (61.85%), Postives = 195/249 (78.31%), Query Frame = 1
Query:    7 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN++A QI RQA +             GE + FA+VFAAMG+  E + +F  +F++ G++E+  +F+NLA+DP IERI+TPRIALTTAEYLAYE G HVLVILTD+++Y +ALRE++AAR EVPGRRGYPGYMYTDLA +YERAGR++GR+G++TQIPILTMP+DDITHP
Sbjct:   83 KIGVSYDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQAKV------------RGEGEQFAVVFAAMGITGEESNYFMDEFKKTGALEKAVVFINLADDPAIERILTPRIALTTAEYLAYEKGMHVLVILTDLTNYCEALREIAAARNEVPGRRGYPGYMYTDLACLYERAGRVKGREGTVTQIPILTMPDDDITHP 319          
The following BLAST results are available for this feature:
BLAST of CN188190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATB2_METHJ1.656e-8765.04V-type ATP synthase beta chain 2 OS=Methanospirill... [more]
VATB_METAC2.163e-8762.40V-type ATP synthase beta chain OS=Methanosarcina a... [more]
VATB_HALLT2.825e-8761.60V-type ATP synthase beta chain OS=Halorubrum lacus... [more]
VATB_CLONN3.690e-8763.01V-type ATP synthase beta chain OS=Clostridium novy... [more]
VATB_THEPX4.819e-8762.80V-type ATP synthase beta chain OS=Thermoanaerobact... [more]
VATB_THEP36.293e-8762.80V-type ATP synthase beta chain OS=Thermoanaerobact... [more]
VATB_NATPD8.219e-8762.00V-type ATP synthase beta chain OS=Natronomonas pha... [more]
VATB_METVS1.402e-8661.85V-type ATP synthase beta chain OS=Methanococcus va... [more]
VATB_METM71.831e-8661.85V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_METM61.831e-8661.85V-type ATP synthase beta chain OS=Methanococcus ma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188190 ID=CN188190; Name=CN188190; organism=Citrus sinensis; type=EST; length=753bp
GAGGTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATGG
TTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCAGAGGCTTACT
TGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGAA
GAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTGC
TAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAATG
AAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAG
AAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTTTGCAATTGT
GTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTTTCAAACGTG
ATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTTCTGAATCTG
GCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTAC
TACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTCTTGTCATAC
TGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCC
CGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATATGTATACTGA
TTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTCGAAAAGGTT
CCATCACCCAAATTCCAATATTGACTATGCCAAATGACGATATTACACAT
CCC
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