CN188190

Overview
NameCN188190
Unique NameCN188190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METBU (V-type ATP synthase beta chain OS=Methanococcoides burtonii (strain DSM 6242) GN=atpB PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.831e-86
Identity = 155/250 (62.00%), Postives = 195/250 (78.00%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K PVS DMLGRI +G+G+P+D GP I+P+  +DI+G+S+NP  R  PE+ IQTGISTID  N++ RGQK+P+FS +GLPHNEIA QI RQA +             G ++ FA+VFAAMG+  E AQ+F  DFE+ G++ER  +FLNLA+DP +ERI+TPR+ALT AEYLAYE   HVLVILTD+++Y +ALR++ AAREEVPGRRGYPGYMYTDLA +YERAG I+G KGS+TQ  ILTMP DDITHP
Sbjct:   76 IKLPVSKDMLGRILSGAGEPLDGGPRIIPDKRVDINGASMNPYSRMPPEDFIQTGISTIDGTNTLVRGQKLPIFSGSGLPHNEIALQIARQAKV------------PGSDEPFAVVFAAMGITNEEAQYFMDDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHDMHVLVILTDITNYCEALRQMGAAREEVPGRRGYPGYMYTDLASLYERAGVIKGIKGSVTQFSILTMPGDDITHP 313          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_AERPE (V-type ATP synthase beta chain OS=Aeropyrum pernix GN=atpB PE=3 SV=2)

HSP 1 Score: 318.546 bits (815), Expect = 2.391e-86
Identity = 153/250 (61.20%), Postives = 198/250 (79.20%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            ++ PV+ DMLGRI NG G+PID GP I  +   D++G+ +NP+ER YPE+ IQTG+S ID MN++ RGQK+P+FS AGLPHN +AAQI RQA +             GEE+ FA+VF+A+G+  +   FFK+ FEE G++ RV +F+NLA++P + R+ITPR ALT AEYLAYE   HVLVI+TDM++YA+ALRE+SAAREEVPGR+GYPGY+Y+DLA IYERAGR++G+KGSITQ+PILTMPNDDITHP
Sbjct:   80 LEIPVTEDMLGRIMNGLGEPIDGGPKIDADERRDVNGAPLNPAERAYPEDFIQTGVSAIDGMNTLVRGQKLPIFSGAGLPHNRLAAQIARQATV------------RGEEEEFAVVFSAIGIKYDDFLFFKKFFEETGALGRVAMFVNLADEPAMIRLITPRAALTLAEYLAYERDMHVLVIITDMTNYAEALREISAAREEVPGRQGYPGYLYSDLASIYERAGRVKGKKGSITQMPILTMPNDDITHP 317          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METMP (V-type ATP synthase beta chain OS=Methanococcus maripaludis GN=atpB PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 5.328e-86
Identity = 152/249 (61.04%), Postives = 195/249 (78.31%), Query Frame = 1
Query:    7 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTG+STID  N++ RGQKIP+FS +GLPHN++A QI RQA +             GE + FA+VFAAMG+  E + +F  +F++ G++E+  +F+NLA+DP IERI+TPRIALTTAEYLAYE G HVLVILTD+++Y +ALRE++AAR EVPGRRGYPGYMYTDLA +YERAGR++G++G++TQIPILTMP+DDITHP
Sbjct:   83 KIGVSYDMLGRIFNGAGKPLDGGPEIIAEEKLDINGYPLNPVSRNPPNAFVQTGVSTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQAKV------------RGEGEQFAVVFAAMGITGEESNYFMDEFKKTGALEKAVVFINLADDPAIERILTPRIALTTAEYLAYEKGMHVLVILTDLTNYCEALREIAAARNEVPGRRGYPGYMYTDLACLYERAGRVKGKEGTVTQIPILTMPDDDITHP 319          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_HALWD (V-type ATP synthase beta chain OS=Haloquadratum walsbyi (strain DSM 16790) GN=atpB PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 5.328e-86
Identity = 154/250 (61.60%), Postives = 194/250 (77.60%), Query Frame = 1
Query:    4 VKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            +K  V+ D+LGR+ +GSG+PID GP IL +   +I G++INP  R YPEE IQTG++ +D MN++ RGQK+P+FS +GLPHNE+A QI RQA  V   E  D+  +DG E  FA++F AMG+  E A  F  DFE  G++ER  +F+NLA+DP +ER +TPR+ LTTAEYLA+E   HVLVILTDM++Y +ALRE+ AAREEVPGRRGYPGYMYTDLA +YERAGRIEGR+GS+TQIPILTMP DD THP
Sbjct:   75 LKMKVTEDLLGRVLDGSGQPIDGGPEILADERREIVGAAINPYAREYPEEFIQTGVAAVDGMNTLVRGQKLPIFSGSGLPHNELALQIARQA-TVPEEENADDNEDDGSE--FAVIFGAMGITAEEANEFMEDFERTGALERSVVFMNLADDPAVERTVTPRMVLTTAEYLAFEKDYHVLVILTDMTNYCEALREIGAAREEVPGRRGYPGYMYTDLATLYERAGRIEGREGSVTQIPILTMPGDDDTHP 321          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_META3 (V-type ATP synthase beta chain OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=atpB PE=3 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.958e-86
Identity = 151/249 (60.64%), Postives = 193/249 (77.51%), Query Frame = 1
Query:    7 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            K  VS DMLGRIFNG+GKP+D GP I+ E  +DI+G  +NP  R  P + +QTGISTID  N++ RGQKIP+FS +GLPHN +AAQI RQA +             G ++ FA+VFAAMG+  E + +F  +F+  G++E   +F+NLA+DP IERI+TPRIALTTAEYLAYE G HVLVI+TD+++Y +ALRE++AAR EVPGRRGYPGYMYTDLA +YERAGR++G+ G++TQIPILTMP+DDITHP
Sbjct:   83 KLGVSTDMLGRIFNGAGKPLDGGPDIIAEDKIDINGYPLNPVSRQSPNDFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNLLAAQIARQAKV------------RGSDEQFAVVFAAMGITAEESNYFMNEFKRTGALENAVVFINLADDPAIERILTPRIALTTAEYLAYEKGMHVLVIMTDITNYCEALREIAAARNEVPGRRGYPGYMYTDLATLYERAGRVKGKSGTVTQIPILTMPHDDITHP 319          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_METM5 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=atpB PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 9.088e-86
Identity = 152/249 (61.04%), Postives = 195/249 (78.31%), Query Frame = 1
Query:    7 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTG+STID  N++ RGQKIP+FS +GLPHN++A QI RQA +             GE + FA+VFAAMG+  E + +F  +F++ G++E+  +F+NLA+DP IERI+TPRIALTTAEYLAYE G HVLVILTD+++Y +ALRE++AAR EVPGRRGYPGYMYTDLA +YERAGR++G++G++TQIPILTMP+DDITHP
Sbjct:   83 KIGVSHDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGVSTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQAKV------------RGEGEQFAVVFAAMGITGEESNYFMDEFKKTGALEKAVVFINLADDPAIERILTPRIALTTAEYLAYEKGMHVLVILTDLTNYCEALREIAAARNEVPGRRGYPGYMYTDLACLYERAGRVKGKEGTVTQIPILTMPDDDITHP 319          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_ENTFA (V-type ATP synthase beta chain OS=Enterococcus faecalis GN=atpB PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 9.088e-86
Identity = 153/246 (62.20%), Postives = 191/246 (77.64%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DM+GR+F+G G+  DNGP +LPE  LDI+G  INP  R YP+E IQTGIS ID +N++ RGQK+P+FSA+GLPH E+AAQI RQA ++              E+ FA+VFAA+G+  E A++F  DF + G+++R  LF+NLANDP IERI TPR+ALT AEYLAYE G HVLVI+TDM++Y +ALRE+SAAR EVPGRRGYPGY+YT+LA +YERAGRI G KGS+TQIPILTMP +D THP
Sbjct:   81 VSPDMMGRVFDGLGRLKDNGPELLPEKKLDINGEVINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSASGLPHKELAAQIARQANVLN------------SEEEFAVVFAAIGITFEEAEYFMEDFRQTGAIDRSVLFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTNYCEALREISAARREVPGRRGYPGYLYTNLATLYERAGRIRGSKGSVTQIPILTMPEEDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CLOPS (V-type ATP synthase beta chain OS=Clostridium perfringens (strain SM101 / Type A) GN=atpB PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.025e-85
Identity = 153/246 (62.20%), Postives = 193/246 (78.46%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGR+F+G G+P DNGP I+PE  LDI+G +INP  R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++              +  FA+VFAA+G+  E A+FF  +F + G+++R  LF+NLA+DP IERI TPR+ALTTAEYLAYE G HVLVI+TD+++Y +ALREVSAAR+EVPGRRGYPGY+YTDL+ +YERAGR+ G++GSITQIPILTMP DD THP
Sbjct:   81 VSEDMLGRVFDGMGRPKDNGPNIIPEKRLDINGEAINPVARNYPSEFIQTGISAIDGLNTLVRGQKLPVFSGSGLPHKELAAQIARQAKVLN------------SDSKFAVVFAAIGITFEEAEFFVDEFTKTGAIDRSVLFMNLASDPAIERIATPRMALTTAEYLAYEKGMHVLVIMTDITNYCEALREVSAARKEVPGRRGYPGYLYTDLSTLYERAGRLVGKEGSITQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CLOPE (V-type ATP synthase beta chain OS=Clostridium perfringens GN=atpB PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.025e-85
Identity = 153/246 (62.20%), Postives = 193/246 (78.46%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGR+F+G G+P DNGP I+PE  LDI+G +INP  R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++              +  FA+VFAA+G+  E A+FF  +F + G+++R  LF+NLA+DP IERI TPR+ALTTAEYLAYE G HVLVI+TD+++Y +ALREVSAAR+EVPGRRGYPGY+YTDL+ +YERAGR+ G++GSITQIPILTMP DD THP
Sbjct:   81 VSEDMLGRVFDGMGRPKDNGPNIIPEKRLDINGEAINPVARNYPSEFIQTGISAIDGLNTLVRGQKLPVFSGSGLPHKELAAQIARQAKVLN------------SDSKFAVVFAAIGITFEEAEFFVDEFTKTGAIDRSVLFMNLASDPAIERIATPRMALTTAEYLAYEKGMHVLVIMTDITNYCEALREVSAARKEVPGRRGYPGYLYTDLSTLYERAGRLVGKEGSITQIPILTMPEDDKTHP 314          
BLAST of CN188190 vs. ExPASy Swiss-Prot
Match: VATB_CLOP1 (V-type ATP synthase beta chain OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=atpB PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.025e-85
Identity = 153/246 (62.20%), Postives = 193/246 (78.46%), Query Frame = 1
Query:   16 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHP 753
            VS DMLGR+F+G G+P DNGP I+PE  LDI+G +INP  R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++              +  FA+VFAA+G+  E A+FF  +F + G+++R  LF+NLA+DP IERI TPR+ALTTAEYLAYE G HVLVI+TD+++Y +ALREVSAAR+EVPGRRGYPGY+YTDL+ +YERAGR+ G++GSITQIPILTMP DD THP
Sbjct:   81 VSEDMLGRVFDGMGRPKDNGPNIIPEKRLDINGEAINPVARNYPSEFIQTGISAIDGLNTLVRGQKLPVFSGSGLPHKELAAQIARQAKVLN------------SDSKFAVVFAAIGITFEEAEFFVDEFTKTGAIDRSVLFMNLASDPAIERIATPRMALTTAEYLAYEKGMHVLVIMTDITNYCEALREVSAARKEVPGRRGYPGYLYTDLSTLYERAGRLVGKEGSITQIPILTMPEDDKTHP 314          
The following BLAST results are available for this feature:
BLAST of CN188190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VATB_METBU1.831e-8662.00V-type ATP synthase beta chain OS=Methanococcoides... [more]
VATB_AERPE2.391e-8661.20V-type ATP synthase beta chain OS=Aeropyrum pernix... [more]
VATB_METMP5.328e-8661.04V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_HALWD5.328e-8661.60V-type ATP synthase beta chain OS=Haloquadratum wa... [more]
VATB_META36.958e-8660.64V-type ATP synthase beta chain OS=Methanococcus ae... [more]
VATB_METM59.088e-8661.04V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_ENTFA9.088e-8662.20V-type ATP synthase beta chain OS=Enterococcus fae... [more]
VATB_CLOPS2.025e-8562.20V-type ATP synthase beta chain OS=Clostridium perf... [more]
VATB_CLOPE2.025e-8562.20V-type ATP synthase beta chain OS=Clostridium perf... [more]
VATB_CLOP12.025e-8562.20V-type ATP synthase beta chain OS=Clostridium perf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188190 ID=CN188190; Name=CN188190; organism=Citrus sinensis; type=EST; length=753bp
GAGGTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATGG
TTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCAGAGGCTTACT
TGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGAA
GAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTGC
TAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAATG
AAATTGCTGCTCAGATTTGTCGCCAGGCTGGTTTAGTCAAGCGATTGGAG
AAGACTGATAATCTTCTTGAGGATGGGGAAGAGGACAACTTTGCAATTGT
GTTTGCAGCTATGGGTGTAAATATGGAGACTGCACAGTTTTTCAAACGTG
ATTTTGAGGAAAATGGATCAATGGAGCGAGTGACTCTTTTTCTGAATCTG
GCTAACGACCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTAC
TACTGCAGAGTATCTGGCATATGAATGTGGGAAGCATGTTCTTGTCATAC
TGACGGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCC
CGAGAGGAAGTGCCTGGAAGAAGAGGGTATCCTGGGTATATGTATACTGA
TTTGGCTCAAATTTATGAGCGTGCTGGACGAATTGAAGGTCGAAAAGGTT
CCATCACCCAAATTCCAATATTGACTATGCCAAATGACGATATTACACAT
CCC
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