EY666011

Overview
NameEY666011
Unique NameEY666011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY666011_ssr50 microsatellite EY666011_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 514
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 120          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSR 124          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.081e-15
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 129          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.718e-15
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE
Sbjct:   62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 129          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++
Sbjct:   47 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 118          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK 118          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK 118          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKLV 526
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F++ +A E+IH RWAMLGA G + PE   K V
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWV 123          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 115          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++
Sbjct:   46 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 117          
The following BLAST results are available for this feature:
BLAST of EY666011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB22_PETSP1.593e-1554.79Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_PEA1.593e-1553.33Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2A_PINSY2.081e-1554.93Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2A_PYRPY2.718e-1554.93Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_SOYBN4.636e-1552.00Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_ORYSJ4.636e-1550.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.636e-1550.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU4.636e-1550.65Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_APIGR4.636e-1554.93Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE4.636e-1552.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666011 ID=EY666011; Name=EY666011; organism=Citrus sinensis; type=EST; length=859bp
CCCACGCGTCCGCCCACGCGTCCGCCATTTCATTTCTCTAACACAAAGAA
GCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACT
CCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGT
CAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTT
TCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAG
TCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTA
TGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTG
AGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGAT
CCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATA
TGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCA
TTCCTGAAGCCTTTAACAAGTTGGTGCTAACTGTGGTCAGGAACGTGAGA
AGGGTAGAAGAAGAAGGCTACGTCTTGGTGGGGAAGAATTAGGCTAGTTC
GGGGGAGAAGTCGGGAGCGAGGCTTAGGTTCGGAGGGGTNGGTGGGATTG
GGGGGGAGGGGGGCGCACGCCACAGAGCACGCCGGGGAGTAACGACTCAG
TGCGAAGTGGGAGGGGGCCGAACTCCCCACGGCAGCCGCGACTCACCAAA
AGCGGAGGGGCCACTTCCTCGNGCCGCGCAAGAACGCCACGACAAGTCAC
ACGGCCGCCGAGTGAACAGGTGTGCCGCTCCACGAGTCGTACAGATGACG
CGGAAGGGA
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