EY666011

Overview
NameEY666011
Unique NameEY666011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++
Sbjct:   39 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 110          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G   PE   K
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK 120          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   K
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAK 119          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYG DR  FL        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G I PE  +K
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSK 119          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117          
The following BLAST results are available for this feature:
BLAST of EY666011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB21_CUCSA4.636e-1552.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA4.636e-1552.00Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB27_TOBAC6.054e-1554.93Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_SILPR6.054e-1552.00Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_LEMGI6.054e-1553.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2G_SOLLC7.907e-1554.93Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC7.907e-1554.93Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL7.907e-1554.93Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_TOBAC7.907e-1554.93Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL7.907e-1554.93Chlorophyll a-b binding protein E, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666011 ID=EY666011; Name=EY666011; organism=Citrus sinensis; type=EST; length=859bp
CCCACGCGTCCGCCCACGCGTCCGCCATTTCATTTCTCTAACACAAAGAA
GCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACT
CCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGT
CAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTT
TCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAG
TCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTA
TGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTG
AGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGAT
CCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATA
TGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCA
TTCCTGAAGCCTTTAACAAGTTGGTGCTAACTGTGGTCAGGAACGTGAGA
AGGGTAGAAGAAGAAGGCTACGTCTTGGTGGGGAAGAATTAGGCTAGTTC
GGGGGAGAAGTCGGGAGCGAGGCTTAGGTTCGGAGGGGTNGGTGGGATTG
GGGGGGAGGGGGGCGCACGCCACAGAGCACGCCGGGGAGTAACGACTCAG
TGCGAAGTGGGAGGGGGCCGAACTCCCCACGGCAGCCGCGACTCACCAAA
AGCGGAGGGGCCACTTCCTCGNGCCGCGCAAGAACGCCACGACAAGTCAC
ACGGCCGCCGAGTGAACAGGTGTGCCGCTCCACGAGTCGTACAGATGACG
CGGAAGGGA
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