EY666011

Overview
NameEY666011
Unique NameEY666011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 514
            WYGPDR  +L        E P YLTGE P DYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 120          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE
Sbjct:   45 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 112          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPE 115          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE
Sbjct:   29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 96          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE
Sbjct:   49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.033e-14
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.349e-14
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  293 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            ++YGP+R  +L  G    +  P YLTGE PGDYG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K
Sbjct:   35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAK 108          
The following BLAST results are available for this feature:
BLAST of EY666011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB24_TOBAC7.907e-1554.93Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_PETSP7.907e-1553.42Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_TOBAC7.907e-1554.93Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ7.907e-1556.34Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_HORVU7.907e-1554.93Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_TOBAC7.907e-1554.93Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_SOYBN7.907e-1554.93Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ORYSJ7.907e-1556.34Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_WHEAT1.033e-1456.34Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLRE1.349e-1452.63Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666011 ID=EY666011; Name=EY666011; organism=Citrus sinensis; type=EST; length=859bp
CCCACGCGTCCGCCCACGCGTCCGCCATTTCATTTCTCTAACACAAAGAA
GCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACT
CCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGT
CAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTT
TCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAG
TCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTA
TGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTG
AGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGAT
CCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATA
TGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCA
TTCCTGAAGCCTTTAACAAGTTGGTGCTAACTGTGGTCAGGAACGTGAGA
AGGGTAGAAGAAGAAGGCTACGTCTTGGTGGGGAAGAATTAGGCTAGTTC
GGGGGAGAAGTCGGGAGCGAGGCTTAGGTTCGGAGGGGTNGGTGGGATTG
GGGGGGAGGGGGGCGCACGCCACAGAGCACGCCGGGGAGTAACGACTCAG
TGCGAAGTGGGAGGGGGCCGAACTCCCCACGGCAGCCGCGACTCACCAAA
AGCGGAGGGGCCACTTCCTCGNGCCGCGCAAGAACGCCACGACAAGTCAC
ACGGCCGCCGAGTGAACAGGTGTGCCGCTCCACGAGTCGTACAGATGACG
CGGAAGGGA
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