EY666011

Overview
NameEY666011
Unique NameEY666011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.142e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 117          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.142e-13
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 117          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.948e-13
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPE 116          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 38/75 (50.67%), Postives = 45/75 (60.00%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAK 123          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 2
Query:  305 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKL 523
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q  EL+H RWAMLGAAG  IPE   K+
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKI 130          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 2
Query:  305 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKL 523
            PDR ++ P      S  PE+L G +PGD+G+DP GL   P+        EL+H+RWAMLGAAG  IPE   K+
Sbjct:   63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKI 130          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYG DR ++L  G L  S  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWA+    G + PE
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPE 115          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.182e-12
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 2
Query:  350 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSR 61          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.304e-11
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 2
Query:  356 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKL 523
            P+YLTG + GD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K+
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKI 119          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 2
Query:  356 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKL 523
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F  +
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSI 118          
The following BLAST results are available for this feature:
BLAST of EY666011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB22_ARATH1.142e-1352.11Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.142e-1352.11Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_SINAL1.948e-1352.11Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_PHYPA3.322e-1350.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC3.673e-1246.58Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY3.673e-1246.58Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE6.265e-1250.70Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_CUCSA8.182e-1254.39Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB24_ARATH5.304e-1148.21Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA9.047e-1148.21Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666011 ID=EY666011; Name=EY666011; organism=Citrus sinensis; type=EST; length=859bp
CCCACGCGTCCGCCCACGCGTCCGCCATTTCATTTCTCTAACACAAAGAA
GCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACT
CCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGT
CAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTT
TCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAG
TCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTA
TGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTG
AGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGAT
CCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATA
TGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCA
TTCCTGAAGCCTTTAACAAGTTGGTGCTAACTGTGGTCAGGAACGTGAGA
AGGGTAGAAGAAGAAGGCTACGTCTTGGTGGGGAAGAATTAGGCTAGTTC
GGGGGAGAAGTCGGGAGCGAGGCTTAGGTTCGGAGGGGTNGGTGGGATTG
GGGGGGAGGGGGGCGCACGCCACAGAGCACGCCGGGGAGTAACGACTCAG
TGCGAAGTGGGAGGGGGCCGAACTCCCCACGGCAGCCGCGACTCACCAAA
AGCGGAGGGGCCACTTCCTCGNGCCGCGCAAGAACGCCACGACAAGTCAC
ACGGCCGCCGAGTGAACAGGTGTGCCGCTCCACGAGTCGTACAGATGACG
CGGAAGGGA
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