CK939405

Overview
NameCK939405
Unique NameCK939405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.255e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 511
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.909e-11
Identity = 41/126 (32.54%), Postives = 67/126 (53.17%), Query Frame = 2
Query:  191 AFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDC-----------RYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 532
            AF +L+  K ++++++K+               +  +EDF   L                RYAVYDF+Y + S +  ++KI FIAWSP  + I+ KM+YA+SK+  +R L GI  E+QA D  +++
Sbjct:    6 AFNDLKLNKKYKFIVYKLSDDYKEIVIDKAS-ESRDWEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIE 130          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.909e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 508
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  ++ L GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 508
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 508
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 508
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 508
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 508
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  R+   GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQ 136          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 508
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF1_XENTR (Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 508
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  ++   GI +E Q
Sbjct:   66 DPYKAFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRFPGIKHEWQ 136          
The following BLAST results are available for this feature:
BLAST of CK939405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
COF1_BOVIN2.255e-1243.84Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COFI_GIBZE1.909e-1132.54Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF1A_XENLA1.909e-1143.06Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF2_PIG2.493e-1143.06Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE2.493e-1143.06Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN2.493e-1143.06Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN2.493e-1143.06Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF1B_XENLA2.493e-1143.06Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]
COF2_CHICK4.252e-1143.06Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF1_XENTR7.253e-1141.67Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939405 ID=CK939405; Name=CK939405; organism=Citrus sinensis; type=EST; length=884bp
GGGGATTACGTATAAAACTAGGCCACTTCTTTTAGTTTTATTCTGAGCAC
AATACATTTTCGCTCTCTTTCATTGTTTATTTACTTGCTCTGGTGATCTG
CGTTCTGTTGCTGCCGCCGCCATGTCTTTCAGAGGACTAAGTCGACCAAA
TGCCACTTCTGGCATGGGCGTTGCTGATCACAGCAAAAATGCATTCACGG
AATTGCAAAGGAAGAAGGTTCACCGTTATGTGATTTTTAAGATTGATGAG
AAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGGCCCCGCTGAGAGCTA
CGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATTGTCGATATGCTGTAT
ATGACTTTGACTATGTGACTTCTGAGAATTGTCAGAAGAGCAAGATATTC
TTCATTGCATGGTCCCCTTCAACCTCTAGAATCCGTGCCAAGATGCTGTA
CGCCACATCTAAAGACAGATTTCGACGGGAGCTGGATGGTATCCACTATG
AGATTCAGGCTACTGATCCTACAGAGATGGATCTTGGAGAGCTTAGAAAC
CGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTCTTCCTTCCATGAAAA
AAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCCTTGCTTCATTAATCT
ATGTGCAAAAATCTATGCGTAATCTTCGAATAACTGGCAATGTGGGAAGA
CTGATTGGGCTGAGGTTATCTTGTTGTGGTGAAATTAGCTTCCCAGTGGT
TTATTGCTACTCTGATGAATATAAGTTTGTTTGTTGGGTATTTGGAAATC
CTAGAACATATTATCGTAACATTGATCTCTAATTCATATTCGCTGTCCTT
GTACTTCCTCCTTGATTTTATTTTCTATAATGTG
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