CN188176

Overview
NameCN188176
Unique NameCN188176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:340..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 45/137 (32.85%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  198 RSLSQVLNFMDQMTENPFF-------SGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR------XXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQV 569
            R++ Q+++ MD++ E+          SGT G +R  WD  + ++ + +  DMPGL KEDV+VS+E + LVI+                 +   Y +R+ LP+ + + D+IKAE+KNGVL +++PK + E++    Q+
Sbjct:  100 RTMRQMIDTMDRLFEDTMTFPGRNRASGT-GEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVK-DKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  195 RSLSQVLNFMDQMTENPFFSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXESVRR-----YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 569
            RS+ Q+L+ MD++ E+      R    G +R  W+ K+ +  + +  DMPG+ KEDV+VS+E + LVI+          +   R     Y +R+ LP+   + +++KAE+K+GVL +T+PK K E      Q++
Sbjct:  100 RSMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEK-EKVKAELKDGVLYITIPKTKIERTVIDVQIQ 232          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = -2
Query:  195 RSLSQVLNFMDQMTEN--------PFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR-----------XXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 569
            R++ Q+L+ MD++ ++        P  S   G +R  WD  E D  + +  DMPGL +E+V+V +E + LVIR                      SV  Y  R+ LP++  ++ +++AE+KNGVL VTVPK + E +    QV+
Sbjct:   98 RTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKS-KVRAELKNGVLLVTVPKTEVERKVIDVQVQ 240          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = -2
Query:  195 RSLSQVLNFMDQMTENPFFSGTRGG------LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR-----------XXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 569
            R++ Q+L+ MD++ ++     TR         R  WD  E +  + +  DMPGL +E+VRV +E + LVIR                      SV  Y  R+ LP++  ++ Q++AE+KNGVL V+VPK + E +    QV+
Sbjct:   98 RTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKS-QVRAELKNGVLLVSVPKRETERKVIDVQVQ 238          
The following BLAST results are available for this feature:
BLAST of CN188176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS21C_SOLLC2.791e-1332.85Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA1.809e-1232.84Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS26P_ORYSJ6.875e-1232.6426.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS21C_WHEAT7.602e-1132.39Small heat shock protein, chloroplastic OS=Triticu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188176 ID=CN188176; Name=CN188176; organism=Citrus sinensis; type=EST; length=666bp
TTTTTTTTTTTTTTTTTACCCAACAAAACTAAGTAAACTCCTTTTATATG
CGAAGTAACACAATTATTCAAACTTCGAACACCACCATTTCAGAACATGT
TTGTAACTGTTAGCCCACATAAACTACACAAAATTATTCTCACTCAATAT
CCTGGACAGAAAAGCTACTACTAAAAGCCAACTCTTTAATCAACCTTCAC
TTGGAACACATCAGCCCTCTCCTCTTCCTTCACCTTGGGCACCGTCACTT
TCAGCACACCATTCTTCATCTCAGCCTTGATCTGATCAGTCCTGTAGAGC
TTCTCTGGCAAATCAATCCTGCTGGTGTACCTACGCACGCTCTCTTCGTC
CTCTCCTTCTTTTCCGCCCTCGCCTCTGATCACCAGCGTGTTCTGCTCCA
GAGAGACTCTCACGTCTTCCTTGCCCAGCCCTGGCATGTCGATGCTGAGG
TTCAACGCATCATCGGTTTCTTTAGCATCCCAGCCTCTGCGCAGTCCACC
ACGTGTGCCGCTGAAGAAAGGATTCTCCGTCATCTGATCCATGAAGTTCA
GGACCTGGCTCAGGCTCCTTGTTGGTGAAAATGGATCAAACACATCTGAG
AAGAAGTCGTCACGACGGCGAGGGAAAGAGCGAGCGGAACGGCGATCAAT
GTCGAGATCACGGTCG
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