CN188176
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13 Identity = 45/137 (32.85%), Postives = 78/137 (56.93%), Query Frame = -2 Query: 198 RSLSQVLNFMDQMTENPFF-------SGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR------XXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQV 569 R++ Q+++ MD++ E+ SGT G +R WD + ++ + + DMPGL KEDV+VS+E + LVI+ + Y +R+ LP+ + + D+IKAE+KNGVL +++PK + E++ Q+ Sbjct: 100 RTMRQMIDTMDRLFEDTMTFPGRNRASGT-GEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVK-DKIKAELKNGVLFISIPKTEVEKKVIDVQI 234
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12 Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = -2 Query: 195 RSLSQVLNFMDQMTENPFFSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXESVRR-----YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 569 RS+ Q+L+ MD++ E+ R G +R W+ K+ + + + DMPG+ KEDV+VS+E + LVI+ + R Y +R+ LP+ + +++KAE+K+GVL +T+PK K E Q++ Sbjct: 100 RSMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEK-EKVKAELKDGVLYITIPKTKIERTVIDVQIQ 232
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12 Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = -2 Query: 195 RSLSQVLNFMDQMTEN--------PFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR-----------XXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 569 R++ Q+L+ MD++ ++ P S G +R WD E D + + DMPGL +E+V+V +E + LVIR SV Y R+ LP++ ++ +++AE+KNGVL VTVPK + E + QV+ Sbjct: 98 RTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKS-KVRAELKNGVLLVTVPKTEVERKVIDVQVQ 240
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11 Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = -2 Query: 195 RSLSQVLNFMDQMTENPFFSGTRGG------LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR-----------XXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 569 R++ Q+L+ MD++ ++ TR R WD E + + + DMPGL +E+VRV +E + LVIR SV Y R+ LP++ ++ Q++AE+KNGVL V+VPK + E + QV+ Sbjct: 98 RTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKS-QVRAELKNGVLLVSVPKRETERKVIDVQVQ 238 The following BLAST results are available for this feature:
BLAST of CN188176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188176 ID=CN188176; Name=CN188176; organism=Citrus sinensis; type=EST; length=666bpback to top |