CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_HAES1 (Triosephosphate isomerase OS=Haemophilus somnus (strain 129Pt) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.423e-39
Identity = 94/230 (40.87%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R+  V GNWK NG+    K++++ L + +               ++L   +++L   D  +  QN  + K GAFTG+IS EML + G+ +VI+GHSERR   +ES+EF+  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELITGLKD-ELNAVSGCDVAIAPPVMYLAEAETALVSSDIALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKKFGVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVMNTLGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHI-AKQSQAVAERVIIQYGGSVNDANAAELFTQPDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CARHZ (Triosephosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.423e-39
Identity = 102/228 (44.74%), Postives = 128/228 (56.14%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSWS-NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK F+ GNWK   TP E    V  L +                F  L  VK +L   +  + AQN   +K GAFTGE+S  ML ++G+ +VILGHSERR    E++E +  K+  A + GL  I CVGETLE+RE G T  VV  Q  K +A   +  + N+ +AYEPVWAIGTGK ATP  AQEV   +R+ L      EIA   RI YGGSV   N KEL A+PD+
Sbjct:    2 RKPFIAGNWKMYKTPVEAAGFVRELIDS-LKDVSGVDVAVCPPFPALWPVKEALEGSNIALGAQNMHFEKEGAFTGEVSPAMLQDIGVKYVILGHSERRAYFGETDELINQKIKAAFTWGLNPIFCVGETLEERERGITKAVVEIQVLKGLAGVTAEQAENLTIAYEPVWAIGTGKTATPDDAQEVCQFIRELLVKLFGREIADKVRIQYGGSVKPENIKELIAKPDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 94/227 (41.41%), Postives = 123/227 (54.19%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  V GNWK N T   V+ +++ L +                     +   +        AQ+C V   GAFTGE SA ML   G  + ++GHSERR+I  ES+E V DK A     GL  + C+GETLEQ EAG T  VV AQ +A+  +  ++S +N V+ YEPVWAIGTGK ATP  AQE+   +R WL A     +A   +I+YGGSV  AN  EL  Q D+
Sbjct:    2 RQALVMGNWKLNATKGSVEALINGLVDAAKDNATVEVAVCPPAVFIPQVEALTADTAITYGAQDCDVNTSGAFTGENSAVMLKEFGCKYTLVGHSERRVIHGESSEVVADKFAVTPENGLVPVLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSWL-AEQDAAVANKVQILYGGSVKPANSAELFGQADI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 96/224 (42.86%), Postives = 125/224 (55.80%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            V GNWK NG+   V ++V+ L   +               ++L L K +      H+ AQN  V   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      + +  +V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    +IA    I YGGSVN  N  EL  QPD+
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRT-ELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNAGNAAELFTQPDI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 93/226 (41.15%), Postives = 128/226 (56.64%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDF-HVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK NG+ E  K ++  +   +              F +L  V+S++      + +QNC   + GA+TGE+SA+M  ++   WVILGHSERR +  E++E +  KV  A+  GL  I CVGETL  RE+G   +V   Q  A+   V    + V+AYEPVWAIGTGK A+P  AQ +H  LR  +     P+IA   RI+YGGSV  +N KEL + PDV
Sbjct:    2 RKKLIAGNWKSNGSLERNKALLEGIVNAKALGSVDVVVCPP--FPYLQSVESAVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAIGTGKTASPEDAQSMHKALRNNI-RKHFPQIADKIRILYGGSVKSSNAKELFSMPDV 224          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_HAES2 (Triosephosphate isomerase OS=Haemophilus somnus (strain 2336) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 93/230 (40.43%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R+  V GNWK NG+    K++++ L + +               ++L   +++L   D  +  QN  + K GAFTG+IS EML + G+ +VI+GHSERR   +ES+EF+  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATPAQAQ VH  +R  + A  S  +A    I YGGS+N AN  EL  QPD+
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELITGLKD-ELNAVSGCDVAIAPPVMYLAEAEAALVSSDIALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKKFGVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVMNTLGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHI-AKQSQAVAERVIIQYGGSINDANAAELFTQPDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BACC7 (Triosephosphate isomerase OS=Bacillus cereus (strain AH187) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 102/228 (44.74%), Postives = 126/228 (55.26%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N T  E    V  + +GQ               LFL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SP  A A RI YGGSV   N KE  AQ D+
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BACC1 (Triosephosphate isomerase OS=Bacillus cereus (strain ATCC 10987) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 102/228 (44.74%), Postives = 126/228 (55.26%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N T  E    V  + +GQ               LFL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SP  A A RI YGGSV   N KE  AQ D+
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BACC0 (Triosephosphate isomerase OS=Bacillus cereus (strain AH820) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 102/228 (44.74%), Postives = 126/228 (55.26%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N T  E    V  + +GQ               LFL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SP  A A RI YGGSV   N KE  AQ D+
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 93/228 (40.79%), Postives = 135/228 (59.21%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  V GNWK +    + +++++ L   +              F+ L    + L+     V+AQN    +GGAFTGEISA+ML ++G+  VILGHSERR I +E++  + +KV  AL   + VI C GE L+ R++G+  ++V  Q +     ++  SWS IVLAYEPVWAIGTG+ A+P QAQE+H  +R+ +      EIA    I+YGGSV   N KE+ ++PDV
Sbjct:    2 RKSIVAGNWKMHKNAAQTEELLNELI-AKIPAKTNAQVIVAPTFVNLQAAAAKLKNTTIGVSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTALKHDMTVIFCFGEELKDRQSGNHFNIVENQLRDGVFHIAKESWSKIVLAYEPVWAIGTGETASPEQAQEMHEFIRETIRKAFGAEIADEVSILYGGSVKPENAKEIFSKPDV 228          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HAES14.423e-3940.87Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_CARHZ4.423e-3944.74Triosephosphate isomerase OS=Carboxydothermus hydr... [more]
TPIS_VIBSA5.776e-3941.41Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]
TPIS_KLEPN5.776e-3942.86Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_HAHCH5.776e-3941.15Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_HAES25.776e-3940.43Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_BACC75.776e-3944.74Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACC15.776e-3944.74Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACC05.776e-3944.74Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_FLAJ17.544e-3940.79Triosephosphate isomerase OS=Flavobacterium johnso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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