CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BACAN (Triosephosphate isomerase OS=Bacillus anthracis GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 102/228 (44.74%), Postives = 126/228 (55.26%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N T  E    V  + +GQ               LFL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV   +RK +    SP  A A RI YGGSV   N KE  AQ D+
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEVVSPAAAEAVRIQYGGSVKPENIKEYMAQSDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPF (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.852e-39
Identity = 98/229 (42.79%), Postives = 132/229 (57.64%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKK-GGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  V GNWK +GT   V ++++ L                   L++  V   L+     V AQN  V+   GA TGEI+   LV+ G   V++GHSERR I+ E +  +  K A A + GL  + CVGETLEQREAG T++VV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R+ L A  S E+A   R++YGGSV  AN  EL   PD+
Sbjct:    2 RRPMVAGNWKMHGTRASVAELINGLRH--LALPSGVDVAVFPPCLYINQVIDGLKGKSISVGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRQIMGERDGMLNRKFAAAQACGLIPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHKAIREQLAAENS-EVARGVRLLYGGSVKAANAVELFGMPDI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_OCEIH (Triosephosphate isomerase OS=Oceanobacillus iheyensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.852e-39
Identity = 100/228 (43.86%), Postives = 129/228 (56.58%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIV-SVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N    E  + + SV+ +                FL   LV+ +   +  VAAQN   +  GAFTGE+S  ML +LG+  V+LGHSERR +  E+NE V  K   A +  L  I CVGETL+QREA  TM++V  Q K A+A   +   +  ++AYEPVWAIGTGK AT  QA EV  E+RK +   TS ++A    I YGGSV  AN  EL AQ D+
Sbjct:    2 RKKVIAGNWKMNKVLSEAGEFMNSVVPKAPKGNDVEAIVCAPFPFLSK-LVEQAKGSEVKVAAQNMHFEDSGAFTGEVSPVMLKDLGVTHVVLGHSERRELFAETNELVNKKTKAAFAHDLTPIVCVGETLDQREANETMNIVGEQVKQAVAGLTNEQVAETIIAYEPVWAIGTGKTATSEQANEVCTEIRKVVAEVTSADVAEKVIIQYGGSVKPANVDELLAQSDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBL (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.852e-39
Identity = 97/231 (41.99%), Postives = 131/231 (56.71%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFL-GLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK---WLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N + +E   +   + E                 L L G+ K     +  V AQN +     AFTGE S E L  LG+  V++GHSERR  L E+N F  +K+ + L     V+ CVGETL +RE+G T +V+++Q +     +   S+SN++LAYEPVWAIGTGKVATPAQAQEVHF +RK    LF   + EIA +  I+YGGSV   N + L  + D+
Sbjct:    2 RKTVIAGNWKMNLSEKEALSLAHSIKEKIPAISKGRISMIFPSTLHLAGVAKILQGTEILVGAQNVYPSGLAAFTGETSPEQLKELGVKVVMIGHSERRQFLGETNSFCNEKIHFLLKNDFIVLYCVGETLMERESGKTFEVISSQIREGLKGIHSHSFSNLILAYEPVWAIGTGKVATPAQAQEVHFFIRKEIAGLFLG-AKEIAESISILYGGSVKPDNIQTLLKEKDL 231          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBJ (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.852e-39
Identity = 97/231 (41.99%), Postives = 131/231 (56.71%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFL-GLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK---WLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N + +E   +   + E                 L L G+ K     +  V AQN +     AFTGE S E L  LG+  V++GHSERR  L E+N F  +K+ + L     V+ CVGETL +RE+G T +V+++Q +     +   S+SN++LAYEPVWAIGTGKVATPAQAQEVHF +RK    LF   + EIA +  I+YGGSV   N + L  + D+
Sbjct:    2 RKTVIAGNWKMNLSEKEALSLAHSIKEKIPAISKGRISMIFPSTLHLAGVAKILQGTEILVGAQNVYPSGLAAFTGETSPEQLKELGVKVVMIGHSERRQFLGETNSFCNEKIHFLLKNDFIVLYCVGETLMERESGKTFEVISSQIREGLKGIHSHSFSNLILAYEPVWAIGTGKVATPAQAQEVHFFIRKEIAGLFLG-AKEIAESISILYGGSVKPDNIQTLLKEKDL 231          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_THICR (Triosephosphate isomerase OS=Thiomicrospira crunogena (strain XCL-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.287e-38
Identity = 95/229 (41.48%), Postives = 133/229 (58.08%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRP-DFHVAAQNCWVKK-GGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+ FV GNWK +G    +K +V+ LN  +               ++L   K+ L   +  +  QN  ++   GA+TGE SA ML ++G  +VILGHSERR I  E+++ +  KV  AL  GL  I CVGETLE+RE+G    V++ Q  A+   V    ++++V+AYEPVWAIGTGK A+  QAQ+VH  +R  L A  +P +A    I YGGSV   N  EL +QPD+
Sbjct:    2 RQLFVAGNWKMHGDKASIKTLVTGLN-AKADSVGDVLVAVCPPAIYLDYTKNCLMAGEIALGGQNMAIEPVQGAYTGETSASMLKDVGCQYVILGHSERRAIYGETDQDIAAKVKTALDSGLTPILCVGETLEERESGQLESVISQQLDAVISEVGIDQFADVVIAYEPVWAIGTGKTASAQQAQDVHAFIRGQL-AKLNPSVAEKVIIQYGGSVKPNNASELFSQPDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.287e-38
Identity = 96/224 (42.86%), Postives = 127/224 (56.70%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHV-AAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            V GNWK NG+   V ++++ L + +               ++L L K +      V  AQN  V   GAFTGE SAEML ++G  ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      S++  +V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    ++A    I YGGSVN AN  EL  QPD+
Sbjct:    6 VMGNWKLNGSRHMVNELIANLRK-ELAGVTGCAVAIAPPDIYLDLAKHAADGSHIVLGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDELIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGASAFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKVAEQVIIQYGGSVNAANAAELFTQPDI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.195e-38
Identity = 89/223 (39.91%), Postives = 119/223 (53.36%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            V GNWK NGT E V  ++  +                       +          + AQ+      GAFTGE S  M+   G  + ++GHSERR   NE++  V  K     + GL  + C+GETLE+RE   T +VV  Q KA+ D   + +  N V+AYEPVWAIGTGKVA+  QAQ+VH  +R WL A  S  +AA  +I+YGGSV  ++ KEL AQPD+
Sbjct:    6 VMGNWKLNGTKESVSALIKGIEAAADAAKNVEVAVCPPTIFIEQVANLVANNSIELGAQDVSTNISGAFTGETSPVMVKEFGAKYSLVGHSERRQYHNETDAVVAAKFVAIQANGLVPVLCIGETLEERETDKTFNVVETQLKAVIDVSGIDALENAVIAYEPVWAIGTGKVASSEQAQDVHAHIRTWL-AEQSKVVAAKVQILYGGSVKASSAKELFAQPDI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.195e-38
Identity = 97/229 (42.36%), Postives = 125/229 (54.59%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFL--GLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  V GNWK NG+      +++ +  G               +     GL+  +      + AQ+    + GA+TGE+S  ML      +VI+GHSERR    E+NE +  K   AL+ GL  I CVGETL+QREAG T  VVA Q   +   +  S  + IV+AYEPVWAIGTGK ATPA AQEVH  LRK L A  + E A   RI+YGGS+   N KEL A  D+
Sbjct:    2 RRKLVAGNWKMNGSLAANTLLLTEIKSGLGNATSDVAVCVPSPYFAQCQGLLNGAA---IALGAQDVSSHEAGAYTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGLTPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAKNA-EAAMQVRILYGGSMKPENAKELLAMSDI 226          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAA (Triosephosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tpiA PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.195e-38
Identity = 93/223 (41.70%), Postives = 119/223 (53.36%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            + GNWK   T  E   +V  L  G                    +          + AQN + +  GAFTGE+S  MLV++G  +VI+GHSERR    ES+ FV  K+  AL+ GL+ I CVGE+  QR+AG    +V AQ +A    V     +N+V+AYEP+WAIGTG  ATPA AQ +H  +R  L      EIAA  RI YGGSV   N  EL AQPD+
Sbjct:    6 IAGNWKMYKTVGEATTLVRDLLAGLGELSDREAIVCPPFTALAAVAALVADSPLGLGAQNLYPEAQGAFTGEVSPPMLVDIGCRYVIIGHSERRQYFGESDAFVNRKLRAALAHGLRPIVCVGESKPQRDAGQAEPIVTAQVRAALLEVPPDQMANVVIAYEPIWAIGTGDTATPADAQAMHAAIRATLAELYGSEIAATVRIQYGGSVKPDNIDELMAQPDI 228          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACAN7.544e-3944.74Triosephosphate isomerase OS=Bacillus anthracis GN... [more]
TPIS_PSEPF9.852e-3942.79Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_OCEIH9.852e-3943.86Triosephosphate isomerase OS=Oceanobacillus iheyen... [more]
TPIS_LEPBL9.852e-3941.99Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_LEPBJ9.852e-3941.99Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_THICR1.287e-3841.48Triosephosphate isomerase OS=Thiomicrospira crunog... [more]
TPIS_ENT381.287e-3842.86Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_PSYIN2.195e-3839.91Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_JANMA2.195e-3842.36Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_CHLAA2.195e-3841.70Triosephosphate isomerase OS=Chloroflexus aurantia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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