CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 9.455e-66
Identity = 125/225 (55.56%), Postives = 153/225 (68.00%), Query Frame = 3 
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RKFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDV
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDV 227
[Close]
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.235e-65
Identity = 124/225 (55.11%), Postives = 153/225 (68.00%), Query Frame = 3 
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RKFFVGGNWK NG  + + ++++ LN G+               ++L   +  L   F V+AQNC+    GAFTGEIS  M+ + G  WVILGHSERR +  ES+E +G KVA+ALS+ + VI C+GE L+QREAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+WL  N S ++A + RIIYGGSV G  CKEL AQPD+
Sbjct:    4 RKFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPT--IYLDFARQKLDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCKELGAQPDI 226
[Close]
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 1.235e-65
Identity = 125/225 (55.56%), Postives = 153/225 (68.00%), Query Frame = 3 
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RKFFVGGNWK NG    + ++++ LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ +LG  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A + RIIYGGSV GA CKELA+QPDV
Sbjct:    5 RKFFVGGNWKMNGRKNNLGELINTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDV 227
[Close]
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.751e-65
Identity = 124/225 (55.11%), Postives = 152/225 (67.56%), Query Frame = 3 
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RKFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK I D V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDV
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTKVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDV 227
[Close]
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 6.128e-65
Identity = 127/225 (56.44%), Postives = 151/225 (67.11%), Query Frame = 3 
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RKFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ +LG  WV+LGHSERR I  ES+E +G KV +ALS+GL VIAC+GE L++REAG T  VV  QTKAIAD V  W  +VLAYEPVWAIGTGK ATP QAQEVH +LR WL  N S  +A  TRIIYGGSV GA CKELA+QPDV
Sbjct:    5 RKFFVGGNWKMNGRKKCLGELICTLNAAKLPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHIFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSEGVAQCTRIIYGGSVTGATCKELASQPDV 227
[Close]
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 246.899 bits (629), Expect = 8.004e-65
Identity = 124/225 (55.11%), Postives = 153/225 (68.00%), Query Frame = 3 
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RKFFVGGNWK NG  + + ++++ LN  +              ++     +  L     VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDV
Sbjct:    5 RKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYI--DFARQKLDAKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDV 227
[Close]
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.045e-64
Identity = 124/225 (55.11%), Postives = 153/225 (68.00%), Query Frame = 3 
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RKFFVGGNWK NG  + + +++  LN                 ++     +  L P   VAAQNC+    GAFTGEIS  M+ +LG  WV+LGHSERR +  ES+E +G KV++AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N +  +A +TRIIYGGSV GA CKELA+QPDV
Sbjct:    5 RKFFVGGNWKMNGRKKCLGELICTLNAANVPAGTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDV 227
[Close]
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.045e-64
Identity = 127/225 (56.44%), Postives = 150/225 (66.67%), Query Frame = 3 
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RKFFVGGNWK NG  E + +++  LN                  ++L   +S L     VAAQNC+    GAFTGEIS  M+ + GI WVILGHSERR +  ES+E +G KVA+ L   L VIAC+GE LE+REAG+T DVV  QTK IAD V  W+ +VLAYEPVWAIGTGK A+P QAQEVH +LR WL AN S  +A + RIIYGGSV G NCKELAAQ DV
Sbjct:    4 RKFFVGGNWKMNGDKESLGELIMTLNTASLNDETDVVCGAPS--IYLDYARSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGSVTGGNCKELAAQADV 226
[Close]
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.783e-64
Identity = 125/225 (55.56%), Postives = 154/225 (68.44%), Query Frame = 3 
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RKFFVGGNWK NG  + + +++  LN  +               ++L   +  L     VAAQNC+    GAFTGEIS  M+ ++G  WVILGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL ++ S  +A +TRIIYGGSV G NCKELA+Q DV
Sbjct:    4 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPS--IYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDV 226
[Close]
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.188e-64
Identity = 121/225 (53.78%), Postives = 152/225 (67.56%), Query Frame = 3 
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RKFFVGGNWK NG  + + ++++ LN G+               ++L   +  L     ++AQNC+    GAFTGEIS  M+ + G  WVILGHSERR +  E +E +G KVA+ALS+G+ VIAC+GE L+QREAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+W+  N S  +A + RIIYGGSV G  C+ELA QPD+
Sbjct:    4 RKFFVGGNWKMNGDKKSLGELINTLNSGKMNADTEVVCGAPA--IYLDFARQKLDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWVKTNVSEGVAQSVRIIYGGSVTGGTCRELAGQPDI 226
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HUMAN9.455e-6655.56Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
TPIS_XENTR1.235e-6555.11Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_BOVIN1.235e-6555.56Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_GORGO2.751e-6555.11Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_RAT6.128e-6556.44Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_CANFA8.004e-6555.11Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_MOUSE1.045e-6455.11Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPISA_DANRE1.045e-6456.44Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_CHICK1.783e-6455.56Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIS_XENLA5.188e-6453.78Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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