CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_STRPN (Triosephosphate isomerase OS=Streptococcus pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 85/232 (36.64%), Postives = 121/232 (52.16%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK F+ GNWK N  PEE K  V  +                       ++  +   +  VAAQNC+ +  GAFTGE S ++L  +G  +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A      A++V++    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDV
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAA---SVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDV 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_STRPI (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 85/232 (36.64%), Postives = 121/232 (52.16%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK F+ GNWK N  PEE K  V  +                       ++  +   +  VAAQNC+ +  GAFTGE S ++L  +G  +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A      A++V++    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDV
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAA---SVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDV 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_STRP4 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 85/232 (36.64%), Postives = 121/232 (52.16%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK F+ GNWK N  PEE K  V  +                       ++  +   +  VAAQNC+ +  GAFTGE S ++L  +G  +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A      A++V++    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDV
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAA---SVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDV 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_STRP2 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 85/232 (36.64%), Postives = 121/232 (52.16%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK F+ GNWK N  PEE K  V  +                       ++  +   +  VAAQNC+ +  GAFTGE S ++L  +G  +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A      A++V++    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDV
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAA---SVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDV 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_LAWIP (Triosephosphate isomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 87/224 (38.84%), Postives = 114/224 (50.89%), Query Frame = 3
Query:   45 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL---FANTSPEIAAATRIIYGGSVNGANCKEL 698
            K  +  NWK N    E K ++  L                  FL +  +K  L+     + AQN +    GAFTGEIS EML ++G  WV++GHSERR I+ E    +  K   ALS G  +I C+GET ++REAG    V+  Q +     + S   S +V+AYEPVWAIGTGKVA+       H  +RK L     NTS  I    RI+YGGSVN  N   +
Sbjct:    2 KILIAANWKMNKNRLEAKDMIEKLMSMPEGIPPQRDIVLFPPFLAIDTIKEKLKNSTIVIGAQNFYPAPSGAFTGEISLEMLKDVGCSWVLIGHSERRHIIGELPTLIEQKTKLALSYGFSIILCIGETAQEREAGLVNSVLEQQLRTSLTDIPSKAISQLVIAYEPVWAIGTGKVASQQDIITAHTLIRKILHNMIGNTSQNI----RILYGGSVNSENASSI 221          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_DEHE1 (Triosephosphate isomerase OS=Dehalococcoides ethenogenes (strain 195) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 90/229 (39.30%), Postives = 125/229 (54.59%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL---FANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  + GNWK N T  E   +V  +   +              F+ L  VK+ L     H+ AQN + ++ GA+TGEIS  ML ++  P+VI+GHSERR    E+ + V  K+  AL  G+  I CVGE LE+ E G T  ++  Q K     ++  S+I++AYEP+WAIGTGK AT A+A      +RK L   + NT+  I   T I+YGGSVN  N  EL  Q D+
Sbjct:    2 RQIIIAGNWKMNTTLSEACTLVQGMKY-ELDQISGIQKIVCPPFISLAPVKTILDGSSIHLGAQNLFYEEKGAYTGEISPLMLQDI-CPYVIIGHSERRAYFGETGQVVNRKIKAALQAGIMPIVCVGEKLEENENGQTRQILETQMKEALAGINP-SSIIIAYEPIWAIGTGKAATAAEANNTISYIRKVLGDIWGNTASRI---TPILYGGSVNEKNTAELLCQSDI 224          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_VIBPA (Triosephosphate isomerase OS=Vibrio parahaemolyticus GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 86/230 (37.39%), Postives = 123/230 (53.48%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFH---VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  V GNWK NG+   V ++++ LN  +               L++ L +  +    +   + AQN  +   GAFTG++S EML + G   +I+GHSERR   NES+EF+  K  +    GL  + C+GE+  Q EAG T  V A Q  A+ D   V + +  ++AYEP+WAIGTGK AT   AQ +H  +R  L A     +AA   I YGGSV   N +   +QPD+
Sbjct:    2 RRPVVMGNWKLNGSKAMVTELLTGLN-AELEGVEGVDVAVAPPALYIDLAERLIAEGGNKIILGAQNTDLNNSGAFTGDMSPEMLKDFGATHIIIGHSERREYHNESDEFIAKKFNFLKENGLTPVFCIGESEAQNEAGETEAVCARQINAVIDTYGVEALNGAIIAYEPIWAIGTGKAATAEDAQRIHASIRA-LIAAKDEAVAAQVIIQYGGSVKPENAEAYFSQPDI 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BORBZ (Triosephosphate isomerase OS=Borrelia burgdorferi (strain ZS7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 89/229 (38.86%), Postives = 122/229 (53.28%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK F+ GNWK + T  E   +   +                  F  L  V   ++  +  + AQN    + GA T EIS  ML+  G+ +VILGHSE RL L E++E +  K+   L    K +I CVGETL++R++G T++VV  Q K   + V  S    I+LAYEPVWAIGTGK AT  +A+EVH  +R  +    S   +    I YGGSVN  N KEL  +P++
Sbjct:    2 RKTFLAGNWKMHYTSAEASIVAKKIATEVKTLKDDVVIMITPPFTALSKVSECIKGSNILLGAQNMSYMESGARTSEISPSMLLEFGVEYVILGHSECRLYLAETDEIINKKILAGLKHPFKYLILCVGETLDERDSGKTLEVVLNQVKKGLNCVSESDIQRIILAYEPVWAIGTGKTATKEEAEEVHKAIRLEITKLYSKSASDNIIIQYGGSVNSNNVKELMNEPNI 230          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BORBU (Triosephosphate isomerase OS=Borrelia burgdorferi GN=tpiA PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 89/229 (38.86%), Postives = 122/229 (53.28%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK F+ GNWK + T  E   +   +                  F  L  V   ++  +  + AQN    + GA T EIS  ML+  G+ +VILGHSE RL L E++E +  K+   L    K +I CVGETL++R++G T++VV  Q K   + V  S    I+LAYEPVWAIGTGK AT  +A+EVH  +R  +    S   +    I YGGSVN  N KEL  +P++
Sbjct:    2 RKTFLAGNWKMHYTSAEASIVAKKIATEVKTLKDDVVIMITPPFTALSKVSECIKGSNILLGAQNMSYMESGARTSEISPSMLLEFGVEYVILGHSECRLYLAETDEIINKKILAGLKHPFKYLILCVGETLDERDSGKTLEVVLNQVKKGLNCVSESDIQRIILAYEPVWAIGTGKTATKEEAEEVHKAIRLEITKLYSKSASDNIIIQYGGSVNSNNVKELMNEPNI 230          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_GEOBB (Triosephosphate isomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.626e-33
Identity = 87/227 (38.33%), Postives = 119/227 (52.42%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK   T  E   ++  L                   +   L  +       +AAQ+ + ++ GAFTGE+S  ML++ G   VI+GHSERR    E+ E V  KV  AL   L  I C+GETLE REAG T  V+  Q K   + +  + ++ +++AYEPVWAIGTGKVA+  QAQE H  +R  +        A   RI+YGGSV   N K L ++PD+
Sbjct:    2 RKPVIAGNWKLFKTKNEALALIEELAPLVSGVDSVEIVVAPVFTVLPTLPAALAGTGISLAAQDVFWEEEGAFTGEVSPRMLLDAGASHVIIGHSERRQYFGETEETVNKKVKAALKGALVPIVCIGETLEAREAGDTFKVLERQLKGGLEGLTGTQFAPVIVAYEPVWAIGTGKVASDDQAQEAHAFIRGVIAGLFGKSAADKVRILYGGSVKPDNVKGLMSRPDI 228          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRPN1.628e-3336.64Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPI1.628e-3336.64Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP41.628e-3336.64Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP21.628e-3336.64Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_LAWIP1.628e-3338.84Triosephosphate isomerase OS=Lawsonia intracellula... [more]
TPIS_DEHE11.628e-3339.30Triosephosphate isomerase OS=Dehalococcoides ethen... [more]
TPIS_VIBPA2.126e-3337.39Triosephosphate isomerase OS=Vibrio parahaemolytic... [more]
TPIS_BORBZ2.777e-3338.86Triosephosphate isomerase OS=Borrelia burgdorferi ... [more]
TPIS_BORBU2.777e-3338.86Triosephosphate isomerase OS=Borrelia burgdorferi ... [more]
TPIS_GEOBB3.626e-3338.33Triosephosphate isomerase OS=Geobacter bemidjiensi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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