CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BACSK (Triosephosphate isomerase OS=Bacillus clausii (strain KSM-K16) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.185e-33
Identity = 88/227 (38.77%), Postives = 116/227 (51.10%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N T  E    V  +                       L+++    +  + AQ    +  GAFTGEIS + L ++G+ +VI+GHSERR +  E++E V  KV  A +  L  I C GET E+REAG    VV  Q +     +S       V+AYEP+WAIGTGK AT   A E    +R+ + AN S E A A RI YGGSV   N K+  AQPD+
Sbjct:    2 RKPIIAGNWKMNKTIGEAVDFVEAVKANVPAQATVDSVVCAPALFLDRLLQAVKGTELKIGAQTMHFEDNGAFTGEISPKALSDMGVHYVIIGHSERREMFAETDETVNKKVHAAFAHHLVPIMCCGETAEEREAGKMEAVVKEQVENGLAGLSEEQVKQTVIAYEPIWAIGTGKSATEKDANEACAYVRQTVAANFSEEAAEAIRIQYGGSVKPGNIKDYMAQPDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_FRATN (Triosephosphate isomerase OS=Francisella tularensis subsp. novicida (strain U112) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 80/221 (36.20%), Postives = 122/221 (55.20%), Query Frame = 3
Query:   60 GNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            GNWK NG    +K++ S +++ Q               +++  V S L     V  QN      GA+TGEISA ML ++G  ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDV
Sbjct:    7 GNWKMNGNSTSIKELCSGISQAQYDTSRVAIAVFPSS-VYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLDQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDV 225          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_DESVV (Triosephosphate isomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 79/171 (46.20%), Postives = 110/171 (64.33%), Query Frame = 3
Query:  213 FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            F +  Q+ +    GA+TGEI+  ML++ G  WV+ GHSERR IL E +E V  K A++L  GL+V+ C+GE L++REAG   DV+A Q +  +AD  +++   ++V+AYEPVWAIGTGKVA PA+  E H  +R  L A    +  AA RI+YGGSV   N  EL +  +V
Sbjct:   61 FAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRD-GAAIRILYGGSVKPDNAAELLSLDNV 230          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_DESVH (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 79/171 (46.20%), Postives = 110/171 (64.33%), Query Frame = 3
Query:  213 FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            F +  Q+ +    GA+TGEI+  ML++ G  WV+ GHSERR IL E +E V  K A++L  GL+V+ C+GE L++REAG   DV+A Q +  +AD  +++   ++V+AYEPVWAIGTGKVA PA+  E H  +R  L A    +  AA RI+YGGSV   N  EL +  +V
Sbjct:   61 FAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRD-GAAIRILYGGSVKPDNAAELLSLDNV 230          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CLONN (Triosephosphate isomerase OS=Clostridium novyi (strain NT) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 89/227 (39.21%), Postives = 120/227 (52.86%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N T  +  K+V  L                   L   +VK++   +  V AQN   ++ GAFTGE +  ML  LG+ +VILGHSERR    E++  +  K+  A    L  I C+GETLE+REA  T +V+A Q K     +  +  +  V+AYEP+WAIGTGK AT  QA+E    +RK +      E A   RI YGGSV  A  KE  A+P++
Sbjct:    2 RKAIIAGNWKMNNTISQGLKLVEELKPLVADANCDVVVCPPTLALD-AVVKATEGTNIKVGAQNMHFEESGAFTGETAPAMLEELGVKYVILGHSERRQYFGENDADLNKKMKKAFEHNLTPILCIGETLEEREADVTEEVLAKQIKLDLAGLTEAQIAETVIAYEPIWAIGTGKTATSDQAEETIAFVRKTVAGMFGAEAAEKMRIQYGGSVKPATIKEQMAKPNI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS3_RHIEC (Triosephosphate isomerase (Fragment) OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 79/157 (50.32%), Postives = 103/157 (65.61%), Query Frame = 3
Query:  252 GAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            GA+TGE+SAE+L +  I +V++GHSERR    ES   +  K   AL+ GLKVI CVGE+LEQRE+G    VV  Q   +A  V++  W +IV+AYEP+WAIGTGK A+P  AQ +H ++R+ L   TS    A   I+YGGSV   N  ELAA PD+
Sbjct:   68 GAYTGEVSAELLKDSQIEYVLIGHSERREYFAESAAILNAKAQNALNAGLKVIYCVGESLEQRESGQAEVVVLQQICDLASVVTAEQWPHIVIAYEPIWAIGTGKTASPEDAQTMHAKIREGLTQITSH--GANMAILYGGSVKAENAVELAACPDI 222          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS1_LISMF (Triosephosphate isomerase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 85/227 (37.44%), Postives = 116/227 (51.10%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI--VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N T  +  +    +                       LV+ +   +  VAAQNC+ +  GAFTGEIS   L +LG+ +VI+GHSERR   +E++E +  K       G+  I C GETL+QREAG T   V  Q +A    ++    I  V+AYEP+WAIGTGK +T A A E    +R  +    S + A A RI YGGSV   N  +  A+ D+
Sbjct:    2 RKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTNLRVAAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS1_LISIN (Triosephosphate isomerase 1 OS=Listeria innocua GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 85/227 (37.44%), Postives = 116/227 (51.10%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI--VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N T  +  +    +                       LV+ +   +  VAAQNC+ +  GAFTGEIS   L +LG+ +VI+GHSERR   +E++E +  K       G+  I C GETL+QREAG T   V  Q +A    ++    I  V+AYEP+WAIGTGK +T A A E    +R  +    S + A A RI YGGSV   N  +  A+ D+
Sbjct:    2 RKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTNLRVAAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_THET2 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.055e-32
Identity = 87/228 (38.16%), Postives = 117/228 (51.32%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  V GNWK + TP E +   + L   +              F  L + K  L        AQ+    K GA+TGE+SA ML +LG  + I+GHSERR    E++  V +K    L +G+  I CVGE LE RE G  +     Q +   + V       +V+AYEPVWAIGTGK ATP  A+ +H E+RK L        A+  RI+YGGSVN  N  +L + P+V
Sbjct:    2 RRVLVAGNWKMHKTPSEARVWFAELK--RLLPPLQSEAAVLPAFPILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQEIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNV 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CLOAB (Triosephosphate isomerase OS=Clostridium acetobutylicum GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.055e-32
Identity = 87/223 (39.01%), Postives = 118/223 (52.91%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            + GNWK N T  E  K++  L                   L   +V ++   +  VAAQN   ++ GAFTGEIS + L  LG+ +VILGHSERR   NE++  +  KV  A +  +  I C GETLE+REA  T +V   Q K     +S+   + +V+AYEP+WAIGTGK AT  QA E    +RK +      E+A   RI YGGSV     K   A+P++
Sbjct:    6 IAGNWKMNNTISESLKLIEELKPLVKDAKAEVVVAPTAVSLET-VVNATKGSNIKVAAQNAHFEESGAFTGEISLKALEELGVSYVILGHSERRQYFNETDCALNKKVKAAFAHNITPILCCGETLEEREANVTNEVTGKQIKLDLAGLSAEQAAKVVIAYEPIWAIGTGKTATDEQANETIGAIRKTVEVMFGKEVAEKVRIQYGGSVKPNTIKAQMAKPEI 227          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACSK6.185e-3338.77Triosephosphate isomerase OS=Bacillus clausii (str... [more]
TPIS_FRATN8.079e-3336.20Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_DESVV8.079e-3346.20Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_DESVH8.079e-3346.20Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_CLONN8.079e-3339.21Triosephosphate isomerase OS=Clostridium novyi (st... [more]
TPIS3_RHIEC8.079e-3350.32Triosephosphate isomerase (Fragment) OS=Rhizobium ... [more]
TPIS1_LISMF8.079e-3337.44Triosephosphate isomerase 1 OS=Listeria monocytoge... [more]
TPIS1_LISIN8.079e-3337.44Triosephosphate isomerase 1 OS=Listeria innocua GN... [more]
TPIS_THET21.055e-3238.16Triosephosphate isomerase OS=Thermus thermophilus ... [more]
TPIS_CLOAB1.055e-3239.01Triosephosphate isomerase OS=Clostridium acetobuty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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