CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCV (Triosephosphate isomerase OS=Chlamydophila caviae GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.055e-32
Identity = 86/230 (37.39%), Postives = 119/230 (51.74%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRP---DFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK +V GNWK + T +E K  +S+                   F  L     S++       + AQN      GAFTGE+S  ML    + +V+LGHSE R I +E +  +  KV  A   G+  + C+GETLE RE G+T +V++ Q      ++   + +++AYEPVWAIGTGKVA+ A  QEVH   R+ L    S E +    I+YGGSV   N +  A  PDV
Sbjct:    1 MERKSYVFGNWKMHKTAKEAKDFLSIFCPFVKEISPASLVGIAPAFTTLSACCESIKEMDSSIWLGAQNVHQDSSGAFTGEVSLPMLQEFHVNFVLLGHSECRHIFHEEDATIALKVGAAARSGVVPVLCIGETLEARENGTTKEVLSNQLMLGLAQLPETAPVIIAYEPVWAIGTGKVASTADVQEVHAFCREVLSRIFSKEKSEIISILYGGSVKADNAEGFARCPDV 230          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_TREDE (Triosephosphate isomerase OS=Treponema denticola GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.378e-32
Identity = 87/228 (38.16%), Postives = 122/228 (53.51%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            +KF++  NWK N    E K++ + +  G               F  L  V S L+  +  + AQN  +++ GA TGE+S   L+++G+  VILGHSERR I  E+++ +  KV  AL  GL+VI CVGE LE+REAG    V   Q K     VS+     + +AYEPVWAIGTGK A+P  A  +H  +RK L A    + A    I YGGS+   N   L  + ++
Sbjct:    2 KKFYIAANWKMNMNRAEAKQLATEMKAG--LKDGKNKYMIAPSFTLLQDVASVLKGSNILLGAQNMGLEEKGAHTGEVSVLQLLDVGVQAVILGHSERRHIYKETDDLINKKVKLALKHGLEVILCVGELLEEREAGHAEAVCERQIKKGLAEVSAKDLDKVTIAYEPVWAIGTGKNASPEDADAIHSSIRKTLAALYGEKAAKNMIIQYGGSMKPENAAGLLKKHNI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_FRATT (Triosephosphate isomerase OS=Francisella tularensis subsp. tularensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.378e-32
Identity = 80/221 (36.20%), Postives = 122/221 (55.20%), Query Frame = 3
Query:   60 GNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            GNWK NG    +K++ S +++ Q               +++  V S L     V  QN      GA+TGEISA ML ++G  ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDV
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSS-VYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDV 225          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_FRAT1 (Triosephosphate isomerase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.378e-32
Identity = 80/221 (36.20%), Postives = 122/221 (55.20%), Query Frame = 3
Query:   60 GNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            GNWK NG    +K++ S +++ Q               +++  V S L     V  QN      GA+TGEISA ML ++G  ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDV
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSS-VYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDV 225          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_PEDPA (Triosephosphate isomerase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 83/223 (37.22%), Postives = 116/223 (52.02%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            + GNWK N  P+E ++ +  +                       LV  S       AA+N + +  GAFTGE S + L  +G+ +V++GHSERR    E++E +  K     +  +  I C GETLEQREAG T + VA Q T A+ D  +   +  V+AYEP+WAIGTGK A+  QAQEV   +R+ +       +A   RI YGGSV  AN  EL  + D+
Sbjct:    6 IAGNWKMNKNPQETQEFLDAIKGKLPDASVVESVIAAPAIDLSTLVAFSKDEQLKTAAENSYFEDEGAFTGETSPKALNEMGVNYVVIGHSERRQYFGETDEDINKKAKAIFNNNMTPIICCGETLEQREAGETNEWVAGQITNALKDLTAEQVAASVIAYEPIWAIGTGKTASSDQAQEVCHVIRETVAKLYDQTVADKVRIQYGGSVKPANIAELMGKEDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCTU (Triosephosphate isomerase OS=Mycobacterium tuberculosis GN=tpiA PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 89/236 (37.71%), Postives = 122/236 (51.69%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG++S   L  LG  +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ REAG+ +     Q +      +A+++ S   +V+AYEPVWAIGTG+VA+ A AQEV   +RK L +  SP IA   R++YGGSVN  N  ++ AQ DV
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGS---VVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDV 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCTA (Triosephosphate isomerase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 89/236 (37.71%), Postives = 122/236 (51.69%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG++S   L  LG  +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ REAG+ +     Q +      +A+++ S   +V+AYEPVWAIGTG+VA+ A AQEV   +RK L +  SP IA   R++YGGSVN  N  ++ AQ DV
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGS---VVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDV 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 87/228 (38.16%), Postives = 120/228 (52.63%), Query Frame = 3
Query:   45 KFFVGGNWKCNGTPEEVKKIVSVLN----EGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            K  + GNWK N T  E +  +   +    E                F+ L L+  SL     +AAQN      GAFTGEIS +ML +LG  +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T  V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++    N        T +IYGGSVN  N  EL +Q  +
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSI 220          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 87/228 (38.16%), Postives = 120/228 (52.63%), Query Frame = 3
Query:   45 KFFVGGNWKCNGTPEEVKKIVSVLN----EGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            K  + GNWK N T  E +  +   +    E                F+ L L+  SL     +AAQN      GAFTGEIS +ML +LG  +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T  V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++    N        T +IYGGSVN  N  EL +Q  +
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSI 220          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH7 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 7448) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 86/228 (37.72%), Postives = 119/228 (52.19%), Query Frame = 3
Query:   45 KFFVGGNWKCNGTPEEVKKIVSVLN----EGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            K  + GNWK N T  E +  +   +    E                F+ L L+  SL     +AAQN      GAFTGEIS +ML +LG  +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T  V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++             T +IYGGSVN  N  EL +Q  +
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGMIKE--------NFGKDTTVIYGGSVNSKNINELVSQKSI 220          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLCV1.055e-3237.39Triosephosphate isomerase OS=Chlamydophila caviae ... [more]
TPIS_TREDE1.378e-3238.16Triosephosphate isomerase OS=Treponema denticola G... [more]
TPIS_FRATT1.378e-3236.20Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRAT11.378e-3236.20Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_PEDPA1.800e-3237.22Triosephosphate isomerase OS=Pediococcus pentosace... [more]
TPIS_MYCTU1.800e-3237.71Triosephosphate isomerase OS=Mycobacterium tubercu... [more]
TPIS_MYCTA1.800e-3237.71Triosephosphate isomerase OS=Mycobacterium tubercu... [more]
TPIS_MYCHY1.800e-3238.16Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHJ1.800e-3238.16Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH71.800e-3237.72Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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