CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 87/228 (38.16%), Postives = 120/228 (52.63%), Query Frame = 3
Query:   45 KFFVGGNWKCNGTPEEVKKIVSVLN----EGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            K  + GNWK N T  E +  +   +    E                F+ L L+  SL     +AAQN      GAFTGEIS +ML +LG  +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T  V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++    N        T +IYGGSVN  N  EL +Q  +
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSI 220          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCBO (Triosephosphate isomerase OS=Mycobacterium bovis GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 89/236 (37.71%), Postives = 122/236 (51.69%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG++S   L  LG  +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ REAG+ +     Q +      +A+++ S   +V+AYEPVWAIGTG+VA+ A AQEV   +RK L +  SP IA   R++YGGSVN  N  ++ AQ DV
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGS---VVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDV 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_FRATO (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 80/221 (36.20%), Postives = 122/221 (55.20%), Query Frame = 3
Query:   60 GNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            GNWK NG    +K++ S +++ Q               +++  V S L     V  QN      GA+TGEISA ML ++G  ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDV
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSS-VYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDV 225          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_FRATH (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tpiA PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 80/221 (36.20%), Postives = 122/221 (55.20%), Query Frame = 3
Query:   60 GNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            GNWK NG    +K++ S +++ Q               +++  V S L     V  QN      GA+TGEISA ML ++G  ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDV
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSS-VYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDV 225          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_FRATF (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tpiA PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 80/221 (36.20%), Postives = 122/221 (55.20%), Query Frame = 3
Query:   60 GNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            GNWK NG    +K++ S +++ Q               +++  V S L     V  QN      GA+TGEISA ML ++G  ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDV
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSS-VYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDV 225          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_DESDG (Triosephosphate isomerase OS=Desulfovibrio desulfuricans (strain G20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 85/229 (37.12%), Postives = 114/229 (49.78%), Query Frame = 3
Query:   45 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR--PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW---SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            K  +  NWK   TP+E       L +                F+ L  V  +      F+  AQN +    GA+TGEIS  M+V+ G  W + GHSERR +L ES+ FVG K A+ L +GL V+ C+GETLE+RE G    V+  Q       V +      + +AYEPVWAIGTGKVA  A+    H  +R  L     P  A + RI+YGGSV   N   + +  +V
Sbjct:    2 KKLMAANWKMYKTPQEAALTAGELVKAVGTVPDDREVLVFPPFVGLAQVAQAFSGVAGFYCGAQNVYPADEGAYTGEISPGMIVSTGAAWALTGHSERRSVLGESSAFVGQKTAFCLEKGLNVVLCIGETLEEREGGQLEKVLRGQLSEGLSGVPAGIAPERLAIAYEPVWAIGTGKVAGTAEIAATHAVVRGML-RELLPAAADSMRILYGGSVKPDNAAAIISLDNV 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BORRA (Triosephosphate isomerase OS=Borrelia recurrentis (strain A1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 91/229 (39.74%), Postives = 120/229 (52.40%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLV-KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK F+ GNWK + T  E   +   + +G               F  L  V + +   +  + AQN   +  GA T EI+  ML+  G+ +VILGHSE R  L E++E +  KV   L    K +I CVGETLE+RE G T+DVV  Q +     V  S    I+LAYEPVWAIGTGK AT  +AQEVH  +R  + +  S   A    I YGGSVN  N + L  + D+
Sbjct:    2 RKVFLAGNWKMHYTSVEAADVAKQIVDGVYNINNNVVVMVTPTFTSLCKVCRVTKGTNVLLGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGSVNVDNVEGLMGENDI 230          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BORDL (Triosephosphate isomerase OS=Borrelia duttonii (strain Ly) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 91/229 (39.74%), Postives = 120/229 (52.40%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLV-KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK F+ GNWK + T  E   +   + +G               F  L  V + +   +  + AQN   +  GA T EI+  ML+  G+ +VILGHSE R  L E++E +  KV   L    K +I CVGETLE+RE G T+DVV  Q +     V  S    I+LAYEPVWAIGTGK AT  +AQEVH  +R  + +  S   A    I YGGSVN  N + L  + D+
Sbjct:    2 RKVFLAGNWKMHYTSVEAADVAKQIVDGVYNINNNVVVMVTPTFTSLCKVCRVTKGTNVLLGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGSVNVDNVEGLMGENDI 230          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS1_RHILO (Triosephosphate isomerase 1 OS=Rhizobium loti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 87/221 (39.37%), Postives = 113/221 (51.13%), Query Frame = 3
Query:   39 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 698
            G +  V GNWK NGT   + ++  + N                    L      L R   H   ++C  K+ GA+TG ISAEML + G   VI+GHSE R    E +  V  K A A   GL  I C+GET +QREAG+T++V++ Q        ++ SN V+AYEPVWAIGTG   T A   E H  +R+ L        AA TRI+YGGSV  +N  EL
Sbjct:    4 GIRPLVAGNWKMNGTSASLNELRMIGNGFMSGLDAETEALVCVPATLLSHAAEILSRTPVHAGGEDCHTKESGAYTGCISAEMLKDAGASHVIVGHSECREQRGEDDATVQAKAAAAWRAGLVAIICIGETQQQREAGATLEVLSRQVAGSVPPSATPSNTVIAYEPVWAIGTGLTPTAADVAEAHAHIRERLSEKLGAS-AAKTRILYGGSVKPSNAVEL 223          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_VIBCH (Triosephosphate isomerase OS=Vibrio cholerae GN=tpiA PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.070e-32
Identity = 86/230 (37.39%), Postives = 119/230 (51.74%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFH---VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  V GNWK NG+   V  +++ LN  +               ++L L +  ++   +   + AQN      GA+TG++S  ML + G   +I+GHSERR    ES+EFV  K A+    GL  + C+GET  Q EAG T  V A Q  A+ D   V + +  ++AYEP+WAIGTGK AT   AQ +H  +R  L A     +A    I YGGSV   N     AQPD+
Sbjct:    2 RRPVVMGNWKLNGSKAMVTDLLNGLN-AELEGVEGVDVVVAPPAMYLDLAERLIKEGGNKLILGAQNTDTHNSGAYTGDMSPAMLKDFGASHIIIGHSERRDYHKESDEFVAKKFAFLKENGLTPVFCIGETEAQNEAGETEAVCARQINAVIDAYGVEALNGAIIAYEPIWAIGTGKAATADDAQRIHASIRA-LIAAKDAAVAEQVIIQYGGSVKPENAASYFAQPDI 229          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCH21.800e-3238.16Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCBO1.800e-3237.71Triosephosphate isomerase OS=Mycobacterium bovis G... [more]
TPIS_FRATO1.800e-3236.20Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRATH1.800e-3236.20Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRATF1.800e-3236.20Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_DESDG1.800e-3237.12Triosephosphate isomerase OS=Desulfovibrio desulfu... [more]
TPIS_BORRA2.350e-3239.74Triosephosphate isomerase OS=Borrelia recurrentis ... [more]
TPIS_BORDL2.350e-3239.74Triosephosphate isomerase OS=Borrelia duttonii (st... [more]
TPIS1_RHILO2.350e-3239.37Triosephosphate isomerase 1 OS=Rhizobium loti GN=t... [more]
TPIS_VIBCH3.070e-3237.39Triosephosphate isomerase OS=Vibrio cholerae GN=tp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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