CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPN (Triosephosphate isomerase OS=Chlamydia pneumoniae GN=tpiA PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 83/230 (36.09%), Postives = 115/230 (50.00%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD---FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R+ +V GNWK + T +E K+ V  L                  F  L  +   +        + AQN   +  GAFTGEIS  ML  +G+ +V++GHSERR I  ES+ F+  KV      GL  + CVGE+LE RE G    V+  Q     +++ + S  ++AYEPVWAIGTGKVA  +  Q++H   R+ +    S   A    I+YGGSV   N +      DV
Sbjct:    1 MTRQSYVLGNWKMHKTIQEAKEYVQTLASLLQGEPLSCTIGIASPFTSLRAIHEMINTTGAFLWLGAQNVHPELSGAFTGEISLPMLKEVGVEFVLVGHSERRHIFGESDAFIASKVKSVAQAGLVPVLCVGESLEVREEGKAHQVIKKQLLLGLEQMDNGSEFLIAYEPVWAIGTGKVAEASDVQDIHMFCREVVAERFSEATAEEISILYGGSVKVDNAQRFGQCSDV 230          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_RALEH (Triosephosphate isomerase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=tpiA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 94/229 (41.05%), Postives = 122/229 (53.28%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVA--AQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  V GNWK +G+        + L EG               F +L   ++ L     VA  AQ+   +  GAFTGE+SA M+   G  +V++GHSERR    E+++ V  K   AL  G+  + CVGETL QREAG T  VV  Q +A+ D   V   S +VLAYEPVWAIGTGK AT  QAQ VH  LR  + A  +  +A    I+YGGSV   N  EL +  D+
Sbjct:    2 RQKLVIGNWKMHGS----LAANAALLEGIKAGAAKATLAVCAPFPYLAQCQALLNGS-QVAWGAQDVSAEARGAFTGEVSASMVGEFGCTYVLVGHSERRTYHGETDQTVAAKALRALEFGIVPVVCVGETLAQREAGETEAVVGRQLQAVLDALTVEQLSRVVLAYEPVWAIGTGKTATSEQAQAVHAFLRGQVAARDA-GVAERMAILYGGSVKPDNAAELFSMTDI 224          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_GRABC (Triosephosphate isomerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 85/223 (38.12%), Postives = 114/223 (51.12%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            + GNWK NG     + ++  L +                   +    S L      V AQ+C + + GA TG++SAEMLV  G  WVILGHSERR    E +E V +KV  A   GL  I CVGET ++R +G   ++V  Q K ++ D  ++ SN V+AYEPVWAIGTG+ AT      +H  +R+ L      E     RI+YGGSV   N   L   P+V
Sbjct:    5 IAGNWKMNGLRSTSESLLQALRDAAPHALRNCDMLICPPATLIAQAASVLAGSGIEVGAQDCHMARSGAHTGDLSAEMLVEAGAHWVILGHSERRRDHGELSETVREKVIAARQFGLTPIVCVGETEDERASGRETEIVGWQIKGSLPDGFAADSNGVIAYEPVWAIGTGRTATVEDVAMMHAFIREELVRQFG-EAGRGVRILYGGSVKPENAASLLRVPEV 226          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BIFLO (Triosephosphate isomerase OS=Bifidobacterium longum GN=tpiA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 87/230 (37.83%), Postives = 126/230 (54.78%), Query Frame = 3
Query:   54 VGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVA--AQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            V GNWK N    E    V+K+V +L +                F  L  V+  +  D  HVA  AQ+  V   GAFTG++SA+M+ +LG  +VI+GHSERR    E +  + D+V   L+ G++ I CVGE+ E+R  G  +D    Q + +   ++    + +++AYEPVWAIGTG VATP  AQ+    +R  L      +++ + RI+YGGSV   N  EL +QPDV
Sbjct:    9 VAGNWKMNFDHLEATYFVQKLVWLLRDAHFDFKRCEVALFPS-FTSLRSVQVLVEADKLHVAYGAQSVSVTTQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESFEERRQGIELDFAVGQVRDVTRDLNEEQAAKLIVAYEPVWAIGTGMVATPQSAQDAANAIRNDLKTTFGTKVSDSVRILYGGSVTSKNAAELISQPDV 237          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BIFLD (Triosephosphate isomerase OS=Bifidobacterium longum (strain DJO10A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 87/230 (37.83%), Postives = 126/230 (54.78%), Query Frame = 3
Query:   54 VGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVA--AQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            V GNWK N    E    V+K+V +L +                F  L  V+  +  D  HVA  AQ+  V   GAFTG++SA+M+ +LG  +VI+GHSERR    E +  + D+V   L+ G++ I CVGE+ E+R  G  +D    Q + +   ++    + +++AYEPVWAIGTG VATP  AQ+    +R  L      +++ + RI+YGGSV   N  EL +QPDV
Sbjct:    9 VAGNWKMNFDHLEATYFVQKLVWLLRDAHFDFKRCEVALFPS-FTSLRSVQVLVEADKLHVAYGAQSVSVTTQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESFEERRQGIELDFAVGQVRDVTRDLNEEQAAKLIVAYEPVWAIGTGMVATPQSAQDAANAIRNDLKTTFGTKVSDSVRILYGGSVTSKNAAELISQPDV 237          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_SYMTH (Triosephosphate isomerase OS=Symbiobacterium thermophilum GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.167e-31
Identity = 80/168 (47.62%), Postives = 100/168 (59.52%), Query Frame = 3
Query:  219 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            + AQN   K  GAFTGE+S  MLV+ G  +VILGHSERR +  ES+E VG KV  AL  GL  I C+GETLE+++AG    V   Q  A  + ++    +N+V+AYEPVWAIGTG+   P  AQ     +R  +     PE AA  RI YGGSV   N     AQPD+
Sbjct:   61 LGAQNMSDKPSGAFTGEVSGAMLVDAGCRYVILGHSERRRLFGESDEVVGAKVRAALQHGLIPILCIGETLEEQQAGEADAVNRRQLLAGLEGLTPEQVANLVIAYEPVWAIGTGRNCDPGDAQARIAAVRAVVAEAFGPEAAARVRIQYGGSVKPENMAAYMAQPDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCUA (Triosephosphate isomerase OS=Mycobacterium ulcerans (strain Agy99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.167e-31
Identity = 90/233 (38.63%), Postives = 118/233 (50.64%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +       Q+      GA+TG+IS   L  LG  +V++GHSERR   NE +  V  K A AL   L  I C+GE L+ REAG+ +     Q +     +S+   S +V+AYEPVWAIGTG+VA  A AQEV   +R  L +  SP+IA A R++YGGSVN  N  EL AQ DV
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYYDKVDVTVIPPFTDLRSVQTLVDGDKLRLTYGGQDLSQHDSGAYTGDISGAFLAKLGCSFVVVGHSERRTYHNEDDALVAAKAAAALKHDLTPIVCIGEHLDVREAGNHVAHNVEQLRGSLSGLSAEQISKVVIAYEPVWAIGTGRVAGAADAQEVCAAIRSELGSLASPQIADAVRVLYGGSVNAKNIGELIAQADV 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMM (Triosephosphate isomerase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.167e-31
Identity = 90/233 (38.63%), Postives = 118/233 (50.64%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +       Q+      GA+TG+IS   L  LG  +V++GHSERR   NE +  V  K A AL   L  I C+GE L+ REAG+ +     Q +     +S+   S +V+AYEPVWAIGTG+VA  A AQEV   +R  L +  SP+IA A R++YGGSVN  N  EL AQ DV
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYYDKVDVTVIPPFTDLRSVQTLVDGDKLRLTYGGQDLSQHDSGAYTGDISGAFLAKLGCSFVVVGHSERRTYHNEDDALVAAKAAAALKHDLTPIVCIGEHLDVREAGNHVAHNVEQLRGSLSGLSAEQISKVVIAYEPVWAIGTGRVAGAADAQEVCAAIRSELGSLASPQIADAVRVLYGGSVNAKNIGELIAQADV 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_ANOFW (Triosephosphate isomerase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.167e-31
Identity = 83/227 (36.56%), Postives = 117/227 (51.54%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK + T +E  + V  +                       LV+++   +  + AQN   +  GAFTGEIS   L +LG+ +VI+GHSERR +  E++E V  KV  A   GL  I C GETLE+RE+  T +VV  Q +   + ++      +V+AYEP+WAIGTGK +T   A  V   +R+ +    S E A A RI YGGSV   N     A+  +
Sbjct:    2 RKPIIAGNWKMHKTLKEALQFVEEVKHEVPSNEQVDAVVCAPALFLAHLVEATKGTNVKIGAQNMHFEDQGAFTGEISPVALKDLGVEYVIIGHSERREMFAETDETVNKKVLAAFKHGLVPIVCCGETLEERESNRTNEVVRVQVEKALEGLTEEQVKQVVIAYEPIWAIGTGKSSTAEDANNVCGYIRQVIANKFSQEAANAVRIQYGGSVKPENIAAFLAEEHI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_ACIB3 (Triosephosphate isomerase OS=Acinetobacter baumannii (strain AB307-0294) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.167e-31
Identity = 89/232 (38.36%), Postives = 127/232 (54.74%), Query Frame = 3
Query:   51 FVGGNWKCNGTPEEVKKIVS----VLNEGQXXXXXXXXXXXXXXFLFLGL---VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            +V GNWK N       +++     +L + Q                   +   ++ + R  + VA     V   GA+TGE+SAE+L +  I +V++GHSERR I  ++ E +  K+  AL+ G+ VI CVGE+LEQRE G    VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   TS    +   I+YGGSV   N  ELAA PD+
Sbjct:    9 WVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLTS--AGSNIAILYGGSVKAENAVELAACPDI 238          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLPN5.236e-3236.09Triosephosphate isomerase OS=Chlamydia pneumoniae ... [more]
TPIS_RALEH6.839e-3241.05Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_GRABC6.839e-3238.12Triosephosphate isomerase OS=Granulibacter bethesd... [more]
TPIS_BIFLO6.839e-3237.83Triosephosphate isomerase OS=Bifidobacterium longu... [more]
TPIS_BIFLD6.839e-3237.83Triosephosphate isomerase OS=Bifidobacterium longu... [more]
TPIS_SYMTH1.167e-3147.62Triosephosphate isomerase OS=Symbiobacterium therm... [more]
TPIS_MYCUA1.167e-3138.63Triosephosphate isomerase OS=Mycobacterium ulceran... [more]
TPIS_MYCMM1.167e-3138.63Triosephosphate isomerase OS=Mycobacterium marinum... [more]
TPIS_ANOFW1.167e-3136.56Triosephosphate isomerase OS=Anoxybacillus flavith... [more]
TPIS_ACIB31.167e-3138.36Triosephosphate isomerase OS=Acinetobacter baumann... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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