CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_SILST (Triosephosphate isomerase OS=Silicibacter sp. (strain TM1040) GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.524e-31
Identity = 90/225 (40.00%), Postives = 123/225 (54.67%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATR---IIYGGSVNGANCKEL 698
            M RK    GNWK NGT E + ++ + L +G                +     ++    D  +  Q+C  K  GA TG++SA+ML + G  +VI+GHSERR    E +  V  K   A + GL  + C+GETLE+REAG+T++VV AQ   ++ D V++  N V+AYEPVWAIGTGKV T  Q  EVH  LR  L A       AA +   ++YGGSV   N  E+
Sbjct:    1 MARKL-AAGNWKMNGTGEHLAELEN-LAQGDLPEGVDVLICPPATLISRAADRAG---DIAIGGQDCHAKTSGAHTGDLSADMLRDAGATYVIIGHSERRADHGEGDADVRAKTEAAQAAGLVAVVCIGETLEEREAGTTLEVVGAQLAGSLPDGVTA-ENTVVAYEPVWAIGTGKVPTLDQIAEVHDALRADLVA----RFGAAGKDLPLLYGGSVKPGNAAEI 215          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPU (Triosephosphate isomerase OS=Mycoplasma pulmonis GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.990e-31
Identity = 86/231 (37.23%), Postives = 125/231 (54.11%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXX----FLFLGLVKSSL--RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            +K  + GNWK N T +E +  ++  +                     F  + L    L  + + ++ AQN    + GAFTGEISA+ML ++   +VI+GHSERR    E+N+ V  K   A+  GL  I CVGE+LE+ EAG T  V+  Q K   + +   S IV+AYEP+WAIGTGKVAT   AQ++     K++ + TS ++     I YGGSV+ +N + L  Q D+
Sbjct:    2 KKLLIIGNWKMNKTYDEARDFINAFSNAYALNGAKISENIEYGIAPSFTNMSLFNKELLEKTNINLVAQNINENRSGAFTGEISAQMLKSINAKYVIVGHSERRQNYRETNKIVNQKAKAAIENGLIPIICVGESLEEYEAGKTKAVIKKQIKQSLEAL-DLSKIVVAYEPIWAIGTGKVATAEVAQQI----CKFIRSITSKDLI----IQYGGSVSPSNIENLMKQEDI 223          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_FRATM (Triosephosphate isomerase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.990e-31
Identity = 78/220 (35.45%), Postives = 122/220 (55.45%), Query Frame = 3
Query:   63 NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            NWK NG    +K++ S +++ Q               +++  V S L     V  QN      GA+TGEISA ML ++G  ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A    ++A   +I+YGGS+   N K++ + P+V
Sbjct:    8 NWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSS-VYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDEKLAKNIKIVYGGSLKAENAKDILSLPNV 225          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.990e-31
Identity = 82/222 (36.94%), Postives = 112/222 (50.45%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLV-KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            + GNWK NG      +  ++L                   L  G   K+       V AQ+C  K  GA TG++SAEML + G   +I+GHSERR    ES+  V  K       GL  I CVGET +QR+AG T+D++  Q      + S+ +N+ +AYEPVWAIGTG   T    +++H  +R  L    + E  A  RI+YGGSV  +N  EL A  +V
Sbjct:    9 IAGNWKMNGLKASTAEFEAMLAGAAEVTGKADLLVCPPATLLAGFADKARGTRAVAVGAQDCHAKASGAHTGDLSAEMLADAGASAIIVGHSERRADHGESDVVVHQKTEAVWRAGLVAIVCVGETQQQRDAGQTLDILRGQLNLSLPQGSTAANLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGE-GARMRILYGGSVKPSNAAELMAVANV 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_XANP2 (Triosephosphate isomerase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.599e-31
Identity = 87/227 (38.33%), Postives = 113/227 (49.78%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLN--EGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  + GNWK NG    + +I ++    +G                L +   +        +  QNC     GA TG ISAEML + G+  VI+GHSERR  L+ES+  V  KV  A   GL  I CVGET E+R+AG  + VV  Q         + SN+V+AYEPVWAIGTG+  TP     +H  +R  L +    E A   RI+YGGSV   N   L A  DV
Sbjct:    5 RRVLIAGNWKMNGLKSSLAEIEALAAGYDGDLKAKLDLLVCPPATLL-ISAAERLAGSGVQLGGQNCHPAPAGAHTGGISAEMLKDAGVTSVIVGHSERRTNLSESDAVVMAKVKAAWCFGLLPIVCVGETAEERDAGEAVGVVTRQVHQSLPEGCTASNLVIAYEPVWAIGTGRTPTPEDVANIHGTIRSVLRSQFGAE-ADGIRILYGGSVKPDNAATLMAVADV 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBM (Triosephosphate isomerase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.599e-31
Identity = 85/228 (37.28%), Postives = 118/228 (51.75%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R   + GNWK N T +E  ++V  L                  ++ L  V   ++  +  V AQN   ++ GA+TGEIS +ML  LG+ +VI+GHSERR   NE++E V  KV  A    L  I C GE+LEQRE   T  V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  + +    ++A+  RI YGGSV     K   A+ ++
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKP--LVKDAKCDVVVCPTYVCLPAVLEEVKGSNIKVGAQNMHFEESGAYTGEISPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEQREGNVTEKVLEGQIKVDLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKSMYGEDVASKVRIQYGGSVKPGTIKAQMAKEEI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAB (Triosephosphate isomerase OS=Chlamydophila abortus GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.599e-31
Identity = 87/231 (37.66%), Postives = 120/231 (51.95%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFH----VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK ++ GNWK + T +E K  +SV                   F  L     S++  FH    + AQN      GAFTGEIS  ML    + +V+LGHSE R I +E +  +  KV  A  +G+  + C+GETLE RE G+T  +++ Q      ++   +++++AYEPVWAIGTGKVA+    QE H   R+ L    S E A    I+YGGSV   N +  A  PDV
Sbjct:    1 MERKRYIFGNWKMHKTAKEAKDYLSVFCPLLEEVAPVSCVGITPAFTALHACCESIK-FFHSPLWLGAQNVHQDTSGAFTGEISLPMLKEFDVNFVLLGHSECRHIFHEEDTTIALKVGAAAREGIIPVLCIGETLEVREKGATEAMLSNQLMLGLAQLPETASVIIAYEPVWAIGTGKVASAVDVQEAHAFCREVLANIFSKEKAEEISILYGGSVKADNAEGFARCPDV 230          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCVP (Triosephosphate isomerase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.394e-31
Identity = 88/233 (37.77%), Postives = 116/233 (49.79%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  LG  + ++GHSERR   NE +  V  K A A   GL  I C+GE L+ REAG+ ++    Q +     +S+      V+AYEPVWAIGTG+VA+ A AQEV   +R  L    SPE+AA  R++YGGSVN  N  E+  Q DV
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLTYGAQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHNEDDALVAAKAAAAFKHGLTPIICIGEHLDVREAGNHVEYNVNQLRGSLAGLSAEQIGQAVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASPELAAGVRVLYGGSVNAKNVGEIVGQADV 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPA (Triosephosphate isomerase OS=Mycobacterium paratuberculosis GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.394e-31
Identity = 88/233 (37.77%), Postives = 119/233 (51.07%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG+IS   L  LG  +V++GHSERR   NE +  V  K A AL   L  I C+GE LE REAG+ +     Q +     +S+     +V+AYEPVWAIGTG+VA+ + AQEV   +RK L +  S +IA + R++YGGSVN  N  EL AQ D+
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFALPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLSYGAQDLSQHDSGAYTGDISGAFLAKLGCTFVVVGHSERRTYHNEDDALVAAKAATALKHELTPIICIGEHLEVREAGNHVIHCEEQLRGSLAGLSAEQIGKVVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDI 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA1 (Triosephosphate isomerase OS=Mycobacterium avium (strain 104) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.394e-31
Identity = 88/233 (37.77%), Postives = 119/233 (51.07%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG+IS   L  LG  +V++GHSERR   NE +  V  K A AL   L  I C+GE LE REAG+ +     Q +     +S+     +V+AYEPVWAIGTG+VA+ + AQEV   +RK L +  S +IA + R++YGGSVN  N  EL AQ D+
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFALPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLSYGAQDLSQHDSGAYTGDISGAFLAKLGCTFVVVGHSERRTYHNEDDALVAAKAAAALKHELTPIICIGEHLEVREAGNHVIHCEEQLRGSLAGLSAEQIGKVVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDI 233          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SILST1.524e-3140.00Triosephosphate isomerase OS=Silicibacter sp. (str... [more]
TPIS_MYCPU1.990e-3137.23Triosephosphate isomerase OS=Mycoplasma pulmonis G... [more]
TPIS_FRATM1.990e-3135.45Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_BRASB1.990e-3136.94Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_XANP22.599e-3138.33Triosephosphate isomerase OS=Xanthobacter autotrop... [more]
TPIS_CLOBM2.599e-3137.28Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CHLAB2.599e-3137.66Triosephosphate isomerase OS=Chlamydophila abortus... [more]
TPIS_MYCVP3.394e-3137.77Triosephosphate isomerase OS=Mycobacterium vanbaal... [more]
TPIS_MYCPA3.394e-3137.77Triosephosphate isomerase OS=Mycobacterium paratub... [more]
TPIS_MYCA13.394e-3137.77Triosephosphate isomerase OS=Mycobacterium avium (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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