CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_PARUW (Triosephosphate isomerase OS=Protochlamydia amoebophila (strain UWE25) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.684e-30
Identity = 84/228 (36.84%), Postives = 115/228 (50.44%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R   + GNWK   T +E       L                  F  +  VK  +R     + AQN      GAFTGEI+ +M+   G  +V+LGHSERR +  E N F+  KV  AL  GL  + CVGET E+R++G T  ++  Q +     +++     +++AYEPVWAIG G+ A P  AQE+H   RK +    S E+A    I YGGSVN +N   L  QPD+
Sbjct:    6 RPVVITGNWKMYKTVKEACTFAKALLP--VVEVSPIQVWIAVPFTAIYPVKQEIRNSRLVIGAQNMNDASEGAFTGEIAGKMVKEAGASFVLLGHSERRHLYKEDNAFINRKVKKALEIGLTPVLCVGETFEERKSGETQQIIRTQIQECLAGLTAEDLKTLIIAYEPVWAIGNGQNAKPEGAQEIHQFCRKIIKEIFSEELAEQIVIQYGGSVNPSNAISLLKQPDI 231          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCLE (Triosephosphate isomerase OS=Mycobacterium leprae GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.684e-30
Identity = 86/233 (36.91%), Postives = 116/233 (49.79%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG+IS   L  LG  +V++GHSERR   +E +  V  K A AL   L  I C+GE LE RE G  +     Q +     +S     N+V+ YEPVWAIGTG+VA+ A AQEV   +RK L A  SP++A   R++YGGS+N  N  ++ AQ DV
Sbjct:    1 MSRKSLIAGNWKMNLNHFEAIALVQKIAFSLPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLTYGAQDLSQHDLGAYTGDISGAFLAKLGCSFVLVGHSERRTYHDEGDALVAAKTAAALKNSLTPIVCIGEYLEIREVGEHVSHCQNQLRGSLAGLSPEQIGNVVIVYEPVWAIGTGRVASAADAQEVCEAIRKELGALASPQVAETVRVLYGGSLNAKNIGDIVAQQDV 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_LACLM (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.684e-30
Identity = 82/232 (35.34%), Postives = 117/232 (50.43%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N T  E +  V  +                       +       +  +AA+N + +  GAFTGE S   +V+LGI ++I+GHSERR   +E++E +  K     + G   I C GETLE  EAG T + V+ Q +A      A++V   SN+V+AYEP+WAIGTGK AT   A E    +R  +      E++ A RI YGGSV     + L A+ ++
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGIEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQV---SNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENI 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_LACLA (Triosephosphate isomerase OS=Lactococcus lactis subsp. lactis GN=tpiA PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.684e-30
Identity = 80/229 (34.93%), Postives = 116/229 (50.66%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N T  E +  V  +                       +       +  +AA+N + +  GAFTGE S   +V+LG+ ++I+GHSERR   +E++E +  K     + G   I C GETLE  EAG T + V+ Q +A    +S+   SN+V+AYEP+WAIGTGK AT   A E    +R  +      E++ A RI YGGSV     + L A+ ++
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLSAEQVSNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENI 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_SACEN (Triosephosphate isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.200e-30
Identity = 95/239 (39.75%), Postives = 122/239 (51.05%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPD---FHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAG-----STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R+  + GNWK N    E    V+KI   L E                F  +  V++ +  D       AQ+    + GA+TGE+S  ML  LG  +V++GHSERR    E++E V  KV   L  G+  I CVGE LE REAG     ST  ++ A      +++     +V+AYEPVWAIGTGKVAT A AQEV   LR  L      EIA   R++YGGSV  +N  EL  Q DV
Sbjct:    1 MARQPLIAGNWKMNLNHLEAIALVQKIAFSLPE---KYFAKVEVAVIPPFTDIRSVQTLIDGDKLLLKHGAQDVSEHESGAYTGEVSGPMLAKLGCSYVVVGHSERREHHAETDEVVNRKVRAVLKHGMSPILCVGEPLEVREAGGHVEHSTTQLINALKGLKTEQIRQ---VVVAYEPVWAIGTGKVATAADAQEVCAALRTALADKYGKEIADEVRVLYGGSVKSSNIGELIGQNDV 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_LACLS (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.200e-30
Identity = 81/232 (34.91%), Postives = 117/232 (50.43%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N T  E +  V  +                       +       +  +AA+N + +  GAFTGE S   +V+LG+ ++I+GHSERR   +E++E +  K     + G   I C GETLE  EAG T + V+ Q +A      A++V   SN+V+AYEP+WAIGTGK AT   A E    +R  +      E++ A RI YGGSV     + L A+ ++
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQV---SNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENI 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_RALSO (Triosephosphate isomerase OS=Ralstonia solanacearum GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.873e-30
Identity = 96/232 (41.38%), Postives = 120/232 (51.72%), Query Frame = 3
Query:   42 RKFFVGGNWKC----NGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHV-AAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R   V GNWK     NG  E ++KI +    GQ              F +L   +S L        AQ+   +  GAFTGE++A ML   G  + I+GHSERR    E++  V  K   AL  G+  I CVGETL QREAG T  VVA Q +A+ + +S     +IV+AYEPVWAIGTGK AT  QAQ VH  LR  + A     +A    I+YGGSV   N  EL    D+
Sbjct:    4 RPKLVVGNWKLHGSLNGNAELLEKIKAA---GQTRAALAVCAP----FPYLAQCQSVLAGSSVAWGAQDVSAETRGAFTGEVAASMLSEFGCGYAIVGHSERRTYHGETDAQVAIKALRALEHGITPIVCVGETLAQREAGETELVVARQLEAVLESLSVEQLGHIVVAYEPVWAIGTGKTATSEQAQAVHAFLRGRV-AACDAGVAQRMPILYGGSVKPDNAAELFTMADI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSS (Triosephosphate isomerase OS=Mycobacterium sp. (strain MCS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.753e-30
Identity = 86/233 (36.91%), Postives = 117/233 (50.21%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  LG  + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA  A AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DV
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDV 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSK (Triosephosphate isomerase OS=Mycobacterium sp. (strain KMS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.753e-30
Identity = 86/233 (36.91%), Postives = 117/233 (50.21%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  LG  + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA  A AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DV
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDV 233          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSJ (Triosephosphate isomerase OS=Mycobacterium sp. (strain JLS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.753e-30
Identity = 86/233 (36.91%), Postives = 117/233 (50.21%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEE----VKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  LG  + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA  A AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DV
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDV 233          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PARUW1.684e-3036.84Triosephosphate isomerase OS=Protochlamydia amoebo... [more]
TPIS_MYCLE1.684e-3036.91Triosephosphate isomerase OS=Mycobacterium leprae ... [more]
TPIS_LACLM1.684e-3035.34Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_LACLA1.684e-3034.93Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_SACEN2.200e-3039.75Triosephosphate isomerase OS=Saccharopolyspora ery... [more]
TPIS_LACLS2.200e-3034.91Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_RALSO2.873e-3041.38Triosephosphate isomerase OS=Ralstonia solanacearu... [more]
TPIS_MYCSS3.753e-3036.91Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSK3.753e-3036.91Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSJ3.753e-3036.91Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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