CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIME (Triosephosphate isomerase 1 OS=Rhizobium meliloti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.360e-30
Identity = 82/223 (36.77%), Postives = 113/223 (50.67%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLN--EGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            V GNWK NGT   + +I ++    +G                L++        P   + AQ+C  K+ GA TGE+SAEM+ +     VI+GHSERR    E +  V  K   A    L  I CVGET E+R+AG T+D++  Q        ++  N V+AYEPVWAIGTG   T +  +E H  +R+ L +    E     RI+YGGSV  +N KEL    +V
Sbjct:    9 VAGNWKMNGTRASLDQIKAMAEGVKGDLSARVDALICPPATLLYVATALCDDSP-LMIGAQDCHQKQSGAHTGEVSAEMVADCFGTHVIVGHSERRTDHGEGDALVRAKTEAAHGADLVAIVCVGETEEERKAGRTLDILKRQLSESLPDQATAENTVIAYEPVWAIGTGLTPTVSDVEEAHAFMRRELVSRFGAE-GGKMRILYGGSVKPSNAKELMGVANV 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_ENTFA (Triosephosphate isomerase OS=Enterococcus faecalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29
Identity = 79/227 (34.80%), Postives = 114/227 (50.22%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            RK  + GNWK N T  E +     +                       L  +    +  +AAQNC+ +  GAFTGE S   + +LG+ +VI+GHSERR   +E++E +  K     + G+  I C GETLE  EAG T + +  Q TK +    +   +++V+AYEP+WAIGTGK A    A E+   +R  +      E++ A RI YGGSV   N  E  A+ +V
Sbjct:    2 RKPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVKLAAQNCYWENAGAFTGENSPAAIADLGVDYVIIGHSERREYFHETDEDINKKAKAIFANGMTPIFCCGETLETYEAGKTAEWIEGQITKGLVGLSNEQVASMVIAYEPIWAIGTGKSADANIADEICGVVRSTVEKLYGKEVSEAVRIQYGGSVKPENIAEYMAKENV 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.426e-29
Identity = 84/230 (36.52%), Postives = 112/230 (48.70%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVS----VLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R   + GNWK + T  E ++ +      L                  F  L +V    R  D  V AQN   +  GAFTGEIS  ML  LG+ +VI+GHSERR    E++E V  ++A A   GL  I CVGE+ +QRE G T   +  Q       +    N+V+AYEP+WAIGTG+     +A  V   +R+ L     P       I+YGGSV   N  EL AQP++
Sbjct:    2 RPILIAGNWKMHKTQAEAREFLRELGLALRSSPSGSASQRQIILCVPFTDLAVVAEQSRGSDIAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGNAQLP-------ILYGGSVKAGNIDELMAQPEI 223          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_DICT6 (Triosephosphate isomerase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.426e-29
Identity = 83/231 (35.93%), Postives = 121/231 (52.38%), Query Frame = 3
Query:   42 RKFFVGGNWK----CNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  +  NWK    C  T   +K+ +  L++G               ++   L+K +      + AQN + +K GA+TGEIS  ML +L   +VI+GHSERR   +E+NE +  K+  A + GL  I CVGE  E+RE G T +V+  Q +   + +   +   IV+AYEPVWAIGTG  A    A EV   +RK +      E++   RI YGGSVN  N  E  +Q ++
Sbjct:    2 RRKIIAANWKMYKTCAETESFIKEFIE-LSKGYEEKEIVICPPFTSLYVASKLLKDTA---IKLGAQNMFWEKEGAYTGEISPIMLKDLNCTYVIIGHSERRNYFSETNEMINKKIKSAFNYGLIPIFCVGEKWEERERGKTEEVITKQVREGLEGLEKENVEKIVIAYEPVWAIGTGHSAKGEDANEVAGLIRKIISEMYDTEVSQKIRIQYGGSVNPQNITEFLSQNEI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBL (Triosephosphate isomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.426e-29
Identity = 83/228 (36.40%), Postives = 115/228 (50.44%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R   + GNWK N T +E  ++V  L                  ++ L  V   ++  +  V AQN   ++ GA+TGEI+ +ML  LG+ +VI+GHSERR   NE++E V  KV  A    L  I C GE+LE+RE   T  V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  +       +A   RI YGGSV     K   A+ ++
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKP--LVKDAKCDVVVCPTYVCLPAVLEEVKGSNIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGENVADKVRIQYGGSVKPGTIKAQMAKEEI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBK (Triosephosphate isomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.426e-29
Identity = 83/228 (36.40%), Postives = 115/228 (50.44%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R   + GNWK N T +E  ++V  L                  ++ L  V   ++  +  V AQN   ++ GA+TGEI+ +ML  LG+ +VI+GHSERR   NE++E V  KV  A    L  I C GE+LE+RE   T  V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  +       +A   RI YGGSV     K   A+ ++
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKP--LVKDAKCDVVVCPTYVCLPAVLEEVKGSNIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGESVADKVRIQYGGSVKPGTIKAQMAKEEI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_LEIXX (Triosephosphate isomerase OS=Leifsonia xyli subsp. xyli GN=tpiA PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.862e-29
Identity = 69/145 (47.59%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  252 GAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGAN 686
            GA+TGEI+A  L  L   +VI+GHSERR + NE++E V  K A A+  G+  I CVGET E  E      V  AQ +A    + S ++ V+AYEPVWAIG+G+ ATP QA++V   LR  +      E+AA TRI+YGGSV   N
Sbjct:   79 GAYTGEIAASFLAALEARYVIIGHSERRTLHNETDEQVAAKTAQAVKNGISPIVCVGETAEDLEKHGASAVPVAQLRAALAGIDSAADFVVAYEPVWAIGSGQAATPEQAEQVAAALRAVIAEALGDEVAAKTRILYGGSVKSGN 223          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_ONYPE (Triosephosphate isomerase OS=Onion yellows phytoplasma GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.432e-29
Identity = 81/223 (36.32%), Postives = 116/223 (52.02%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            + GNWK     +E  + +  ++  Q                 L  +      +  V AQN + +  GAFTGE+S + L++LG+  V+LGHSERR    E+++ V  K+  AL   L    CVGE+L  +E   T   +  Q   I   V   +  NI++AYEPVWAIGTGK ATP  A +V  ++R  + A  S + + A RIIYGGSV+ AN K +  QP +
Sbjct:   10 IAGNWKMYKCKDEALEFIQKVSL-QVPDQTQVQTLIFPQLTLLDSLAQLQGTNLQVGAQNMFYESEGAFTGEVSPQNLLSLGVKHVLLGHSERRTFFGETDQTVNLKLLSALKHKLVPTVCVGESLLTKENNQTQVFLDQQLTNIFAGVPEEALQNIIIAYEPVWAIGTGKSATPQDANKVIEQIRDKVTALYSSQASCAMRIIYGGSVSVANIKTILEQPAI 231          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_RALEJ (Triosephosphate isomerase OS=Ralstonia eutropha (strain JMP134) GN=tpiA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.177e-29
Identity = 91/229 (39.74%), Postives = 117/229 (51.09%), Query Frame = 3
Query:   42 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVA--AQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            R+  V GNWK +G+        + L EG               F +L   ++ L     VA  AQ+   +  GAFTGE++A ML   G  + ++GHSERR    ES+  V  K   AL  G+  + CVGETL QREAG T  VV  Q +A  D +S      +VLAYEPVWAIGTGK A+  QAQ VH  LR  +       +A    I+YGGSV   N  EL +  D+
Sbjct:    2 RQKLVIGNWKMHGS----LAANAALLEGIKAAPARARLAVCAPFPYLAQCQALLNGS-QVAWGAQDVSAEARGAFTGEVAASMLGEFGCTYALVGHSERRTYHGESDAVVAAKALRALEFGIIPVICVGETLAQREAGETEVVVGRQLQAALDALSVEQLGRVVLAYEPVWAIGTGKTASSEQAQAVHAFLRAEV-RERDAGVADRMAILYGGSVKPDNAAELFSMSDI 224          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_LACBA (Triosephosphate isomerase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=tpiA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.177e-29
Identity = 78/224 (34.82%), Postives = 119/224 (53.12%), Query Frame = 3
Query:   54 VGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            + GNWK N +  E ++ +  + +GQ               LFL  ++ ++      VAA+ C+ +  GA+TGE S   L  +GIP+ I+GHSERR   NE+++ +  KV      G+  I C  ET+ +R AG  +  V  Q  A    VS+   + IV+AYEP WAIG+G  A+  QA+E  + +R+ L    S ++A   R++YGGSV   N   L A+ +V
Sbjct:    6 IAGNWKMNKSVTEARQFIDAV-QGQLPQADVIETAVAAPALFLQTMLDANAEGTLRVAAETCYYEDEGAYTGETSPRALHEMGIPYTIVGHSERRRYFNETDDVINRKVQAVFRNGMTPILCCDETMGRRTAGEKIHWVVNQVSAALKGVSAEDAAKIVVAYEPSWAIGSGTSASSDQAEEGCYLIRQTLADIYSDDLANGVRVLYGGSVKPDNIAGLMAKSNV 228          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS1_RHIME8.360e-3036.77Triosephosphate isomerase 1 OS=Rhizobium meliloti ... [more]
TPIS_ENTFA1.092e-2934.80Triosephosphate isomerase OS=Enterococcus faecalis... [more]
TPIS_SYNJB1.426e-2936.52Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_DICT61.426e-2935.93Triosephosphate isomerase OS=Dictyoglomus thermoph... [more]
TPIS_CLOBL1.426e-2936.40Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CLOBK1.426e-2936.40Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_LEIXX1.862e-2947.59Triosephosphate isomerase OS=Leifsonia xyli subsp.... [more]
TPIS_ONYPE2.432e-2936.32Triosephosphate isomerase OS=Onion yellows phytopl... [more]
TPIS_RALEJ3.177e-2939.74Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_LACBA3.177e-2934.82Triosephosphate isomerase OS=Lactobacillus brevis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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