CN188175

Overview
NameCN188175
Unique NameCN188175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.787e-56
Identity = 115/229 (50.22%), Postives = 147/229 (64.19%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R+FFVGGN+K NGT E +  I+  LNE +              +L L    +  +    V++QN + K  GAFTGEIS   L +  IPW I+GHSERR+IL E++EF+  KV  A+  G+ VI C+GETLE+REA  T++VV  Q  A A  ++   WS +V+AYEPVWAIGTGKVAT  QAQEVH  +RKWL    SPE +  TRIIYGGSV+  NC+ELA + DV
Sbjct:    1 MPRQFFVGGNFKMNGTAESITAIIKNLNEAKLDETTEVVVSPPALYLTLAQQVADEKKKVAVSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAIDGGISVIFCIGETLEEREADKTIEVVTKQLNAAAKELTKEQWSKVVIAYEPVWAIGTGKVATTQQAQEVHAAIRKWLADAISPEASENTRIIYGGSVSEKNCRELAQERDV 229          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.158e-55
Identity = 112/227 (49.34%), Postives = 143/227 (63.00%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R+FFVGGN+K NGT E V KIV  LN+ +              ++ L  V  + +    V+AQNC+ K  GA+TGEIS E + +LG  W + GHSERR I+ ES++F+  K  +AL QGL VI C+GETLE+R+A  T+DV A Q  A+A  VS WS IV+AYEPVWAIGTG  ATP  AQE H  +R+ L  +   + A  TRI+YGGSVNG N  E   + DV
Sbjct:    1 MARQFFVGGNFKMNGTRESVSKIVDGLNKAELPSNVEVVIAPPAPYIALA-VNENKQKTIEVSAQNCFDKASGAYTGEISPEQIKDLGATWTLTGHSERRTIIKESDDFIASKTKFALDQGLSVILCIGETLEERKANVTLDVCARQLDAVARVVSDWSKIVVAYEPVWAIGTGLAATPEDAQETHKAIREHLSKSIGADAAEKTRILYGGSVNGKNAPEFKDKADV 226          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.749e-55
Identity = 114/230 (49.57%), Postives = 137/230 (59.57%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RK FVGGNWK NG+   +      L +                +L     K+       +AA+NC+    GAFTGEIS EM+ + G  WVILGHSERR I  ESNE +G+KV +AL  GL VI C+GE L +REAG T DV  AQ  AIA  V S   W  +V+AYEPVWAIGTGK ATPAQAQEVH  +R W+  +    IA   RI+YGGSV  +N K+L  QPDV
Sbjct:    1 MTRKLFVGGNWKMNGSYSHINTFFDTLQKADTDPNADIVIGVPACYLKYAQDKAP--KGIKIAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGSVTASNAKDLGTQPDV 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.281e-54
Identity = 116/229 (50.66%), Postives = 141/229 (61.57%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M RKFFVGGN+K NG  E    I+  LN                  L+L   +     +  VAAQN + K  GAFTGEIS + L    I W ILGHSERR+IL E++EF+  K   A+  GL+VI C+GETLE+REA  T+DVV  Q  A A  +S   W+ +V+AYEPVWAIGTGKVAT  QAQEVH  +RKWL    S E A  TRIIYGGSV+  NCK+LA + D+
Sbjct:    1 MPRKFFVGGNFKMNGNAESTTSIIKNLNSANLDKSVEVVVSPPA--LYLLQAREVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGETLEEREANKTIDVVTRQLNAAAKELSKEQWAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADI 227          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.673e-54
Identity = 108/229 (47.16%), Postives = 144/229 (62.88%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFL--FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R FFVGGN+K NGT   +K+IV  LN  +              +L   + LVK S      V AQN ++K  GAFTGE S + + ++G  WVILGHSERR    E ++ + +K A+ALSQG+ VI C+GETL+Q++AG+T+ VV  Q +A+ D+V  WSN+V+AYEPVWAIGTG  ATP  AQE+H  +R++L      + A  TRI+YGGS NG N      +PDV
Sbjct:    1 MARTFFVGGNFKLNGTKSSIKEIVERLNNAKLDPKVEVVLCPPAPYLDYTVSLVKKS---QVSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGETLDQKKAGTTLQVVERQLQAVIDKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGSANGKNAVTFKDKPDV 226          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 6.357e-54
Identity = 114/230 (49.57%), Postives = 147/230 (63.91%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTP-EEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R FFVGGNWK N T     K +V  LN+                 L+L  ++        VAAQN + K+ GAFTGEIS + + + GIP+VILGHSERR + +E++E V  K   AL  GLKVI C+GETL++RE G T  V   Q  A+  ++    WSNIV+AYEPVWAIGTGKVAT +QAQE H ++RK+L    SP++A+ TR+IYGGSVN AN K+LA+Q D+
Sbjct:    1 MTRSFFVGGNWKLNPTSLSAAKALVEALNKADLDPSTEVVVAPPA--LYLLPIQEIAGKAVKVAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDI 228          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 4.120e-53
Identity = 107/228 (46.93%), Postives = 145/228 (63.60%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGL-VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R+FFVGGN+K NGT +++  I+  LN+                 L+LGL V+ + +P   + AQN + K  GAFTGE  A  ++++G  W + GHSERR I+ ES+EF+ +K  +AL  G+KVI C+GETLE+R+ G T+DV A Q  A++  VS WSNIV+AYEPVWAIGTG  ATP  A+E H  +R  L  +   E A  TRI+YGGSVNG N K+   + +V
Sbjct:    1 MARQFFVGGNFKANGTKQQITSIIDNLNKADLPKDVEVVICPPA--LYLGLAVEQNKQPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFALDTGVKVILCIGETLEERKGGVTLDVCARQLDAVSKIVSDWSNIVVAYEPVWAIGTGLAATPEDAEETHKGIRAHLAKSIGAEQAEKTRILYGGSVNGKNAKDFKDKANV 226          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 5.381e-53
Identity = 104/229 (45.41%), Postives = 144/229 (62.88%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFL--FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R FFVGGN+K NG+ + +K+IV  LN                 +L   + LVK   +P   V AQN ++K  GAFTGE S + + ++G  WVILGHSERR   +E ++F+ DK  +AL QG+ VI C+GETLE+++AG T+DVV  Q  A+ + V  W+N+V+AYEPVWAIGTG  ATP  AQ++H  +RK+L +    + A+  RI+YGGS NG+N      + DV
Sbjct:    1 MARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVK---KPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADV 226          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.325e-51
Identity = 102/227 (44.93%), Postives = 139/227 (61.23%), Query Frame = 3
Query:   36 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            M R FF+GGN+K NGT   +K+IV  LN                 +L    V  + +    VAAQN ++K  GAFTGE S E + ++G  WVILGHSERR   +E++EF+ DK  +AL  G+KVI C+GETLE+++ G T++VV  Q +A+ D+V  W+N+V+AYEPVWAIGTG  AT   AQ +H  +R++L    S + A   RI+YGGS NG N      + DV
Sbjct:    1 MARTFFIGGNFKMNGTKASIKEIVERLNSASIPSNVEVVIAPPAAYLDHA-VSLNKKAQVSVAAQNAYLKASGAFTGENSVEQIKDVGAEWVILGHSERRTYFHETDEFIADKTKFALDSGVKVILCIGETLEEKQKGITLEVVQRQLQAVLDKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADV 226          
BLAST of CN188175 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.731e-51
Identity = 103/221 (46.61%), Postives = 140/221 (63.35%), Query Frame = 3
Query:   63 NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 716
            NWKCNG+ + + +++ + N                 F+ L + K  L  P F +AAQN  + K GAFTGE+S  +L + G+ W++LGHSERR    E+NE V DKVA A++ G  VIAC+GETL++RE+G T  VV  Q  AIA ++  + W+ +V+AYEPVWAIGTGKVATP QAQE H  +R W+ +    ++A   RI+YGGSVNG N + L  Q DV
Sbjct:   11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVAST--FVHLAMTKERLSHPKFVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDV 228          
The following BLAST results are available for this feature:
BLAST of CN188175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ASPOR1.787e-5650.22Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_DEBHA1.158e-5549.34Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_TAESO5.749e-5549.57Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_EMENI1.281e-5450.66Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_ZYGBA1.673e-5447.16Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_COPC76.357e-5449.57Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_CANAL4.120e-5346.93Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_YEAST5.381e-5345.41Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_KLUMA1.325e-5144.93Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_TRYBB1.731e-5146.61Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188175 ID=CN188175; Name=CN188175; organism=Citrus sinensis; type=EST; length=718bp
AGTAACACACACACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTC
TTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAA
GATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTG
AGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCG
TTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGG
AGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTA
TTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAA
TCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTT
GAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGAT
CTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTC
TCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGG
AACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAAC
TGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACA
CGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGC
TGCACAGCCTGATGTTGA
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