CX675674

Overview
NameCX675674
Unique NameCX675674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675674 vs. ExPASy Swiss-Prot
Match: RUXG_SCHPO (Probable small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe GN=smg1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 37/79 (46.84%), Postives = 61/79 (77.22%), Query Frame = -3 
Query:  252 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIGMVVIRGNSVVTVEALEPVS 482
            MS++G P DLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E  V+G EK  IG V IRGNSV+ +E L+ ++
Sbjct:    1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIGSVAIRGNSVIMIETLDKMT 77
The following BLAST results are available for this feature:
BLAST of CX675674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RUXG_SCHPO3.688e-1346.84Probable small nuclear ribonucleoprotein G OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63H11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63H11-O21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675674 ID=CX675674; Name=CX675674; organism=Citrus sinensis; type=EST; length=520bp
TTTTTTAAGTGTTAAATCTTTGCTGATTCATTCCGTTGGTCATTCAATGA
TTAATTCTAATTACCTGTTCAAAACGAGCTCCCTTAGAATAAGCATTACA
AAGAAAATGGCCTAATTTTCTCAGGTACCAGTACCACAGCATGAAACATC
TCCCATTGCACACTAACAGCCTTAATATTCATAATAGTACACAACGAAGA
TCAGAAAGCACATTACATCGACCCCAGTGGCAAACCACGTCACTGTGATT
TGCTTACAGGTTCAAGGGCTTCAACAGTGACTACACTATTCCCTCTGATA
ACCACCATCCCTATATCATTTTTCTCATTGCCATTGACCTCAACTGTGTT
GTCAATCACAAGATTCATAAACTGATCAAATCCACGAAGTGTTCCAACAA
TCATCCTATTAGCATTGAGCTTGATCTGAAGCTTCTTATCCATGTACTTC
TTGAGATCCGGAGGCTGGCCTGATCTGCTCATTGTCGAAGCTTAGCGGAT
CGTTTCAGAGGAAAAGCCCT
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