CN188173

Overview
NameCN188173
Unique NameCN188173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATU2_SCHPO (Copper-transporting ATPase ccc2 OS=Schizosaccharomyces pombe GN=ccc2 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.023e-54
Identity = 117/233 (50.21%), Postives = 156/233 (66.95%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNM-VLRD-----FYEVVAATEVNSEHPLAKAIVEYA 689
            DG V+ G S+V ES ++GE  PV K     ++ GT N NG L +KAT+   ES LA IV LV+ AQ++ AP+Q+FADR++  FVP+++ LS ST+  WFL  K+ S   S     M  F + L+  ISV+V+ACPCALGL+TPTAVMVGTGVGA  G++IKGG+ LE  ++V+ +VFDKTGTLTVGK  V    ++ N+  L D     F+  V A+E +SEHP+ KAI E A
Sbjct:  352 DGTVVEGSSYVDESSVSGEPVPVHKTIDDELLSGTANGNGRLLVKATKSPRESQLAVIVDLVQRAQISHAPIQQFADRVAGIFVPVIVALSISTFTFWFLFTKYSSKYPSVFDDPMGKFAVCLKLTISVVVVACPCALGLSTPTAVMVGTGVGALNGIIIKGGEILERLNQVDTVVFDKTGTLTVGKLSVTDISIVDNLEELLDIPKNIFWAFVKASESSSEHPIGKAITEKA 584          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_STAHJ (Copper-exporting P-type ATPase A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=copA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.904e-53
Identity = 115/228 (50.44%), Postives = 152/228 (66.67%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G++ + ESM+TGE+ PV K     VIG T+N NGV+ I AT+VG ++AL+ I+++VE AQ +KAP+Q+ AD IS YFVP+VI ++  T+L W        +P          F+ AL   ISV+VIACPCALGLATPT++MVGTG  A  G+L KGG+ +E  H+V+ +VFDKTGTLT GKP V   +  K     D   +VA+ E NSEHPLA AIV YAK
Sbjct:  331 DGQIIKGETAIDESMLTGESMPVDKHVDDVVIGSTMNTNGVITIMATKVGKDTALSNIIKVVEEAQSSKAPIQRLADIISGYFVPIVIAIALLTFLIWITL----VHP--------GQFEDALVAAISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGEYVERTHQVDTVVFDKTGTLTHGKPEVTYFEGDK-----DTLTLVASAENNSEHPLATAIVNYAK 541          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_STAES (Copper-exporting P-type ATPase A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=copA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.616e-52
Identity = 112/228 (49.12%), Postives = 153/228 (67.11%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V  G + + ESM+TGE+ PV K  G +VIG T+N+NG + I+AT+VG ++AL+ I+++VE AQ +KAP+Q+ AD IS YFVP+V+ ++  T++ W +      +P          F+ AL   ISV+VIACPCALGLATPT++MVGTG  A  G+L KGGQ +E AH V+ IV DKTGT+T G+PVV        +   D  +++A+ E  SEHPLA AIV YAK
Sbjct:  329 DGKVTKGDTSIDESMLTGESIPVEKSSGDSVIGSTMNKNGSIMIEATQVGGDTALSHIIKVVEDAQSSKAPIQRLADIISGYFVPIVVSIAVITFIIWII----FVHP--------GQFEPALVSAISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGQFVERAHYVDTIVLDKTGTITNGQPVVTD-----YVGDNDTLQLLASAENASEHPLADAIVTYAK 539          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_STAEQ (Copper-exporting P-type ATPase A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=copA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.616e-52
Identity = 112/228 (49.12%), Postives = 153/228 (67.11%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V  G + + ESM+TGE+ PV K  G +VIG T+N+NG + I+AT+VG ++AL+ I+++VE AQ +KAP+Q+ AD IS YFVP+V+ ++  T++ W +      +P          F+ AL   ISV+VIACPCALGLATPT++MVGTG  A  G+L KGGQ +E AH V+ IV DKTGT+T G+PVV        +   D  +++A+ E  SEHPLA AIV YAK
Sbjct:  329 DGKVTKGDTSIDESMLTGESIPVEKSSGDSVIGSTMNKNGSIMIEATQVGGDTALSHIIKVVEDAQSSKAPIQRLADIISGYFVPIVVSIAVITFIIWII----FVHP--------GQFEPALVSAISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGQFVERAHYVDTIVLDKTGTITNGQPVVTD-----YVGDNDTLQLLASAENASEHPLADAIVTYAK 539          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_STAS1 (Copper-exporting P-type ATPase A OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=copA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.798e-51
Identity = 107/231 (46.32%), Postives = 155/231 (67.10%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVI---ILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G++ + ESM+TGE+ PV K +   VIG T+N+NG + +KAT+VG ++ALA I+++VE AQ +KAP+Q+ AD IS YFVP+V+   +L+F  W+A+   G+               F+ AL   I+V+VIACPCALGLATPT++MVGTG  A  G+L KGG+ +E  H+++ +V DKTGT+T GKPVV      +  +     +++A+ E  SEHPLA AIV YA+
Sbjct:  330 DGKIIKGKTSIDESMLTGESMPVEKVQDDNVIGSTMNKNGSITVKATKVGKDTALASIIKVVEEAQGSKAPIQRLADVISGYFVPIVVGIAVLTFIIWIAFVQQGQ---------------FEPALVAAIAVLVIACPCALGLATPTSIMVGTGKAAENGILFKGGEHIERTHQIDTVVLDKTGTITNGKPVVTDFDGDEEAL-----QLLASAEKGSEHPLADAIVNYAQ 540          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_STAAW (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain MW2) GN=copA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.654e-51
Identity = 108/228 (47.37%), Postives = 152/228 (66.67%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G + + ESM+TGE+ PV K    TVIG T+N+NG + + AT+VG ++ALA I+++VE AQ +KAP+Q+ AD IS YFVP+V+ ++  T++ W                +  +F+ AL   ISV+VIACPCALGLATPT++MVGTG  A  G+L KGG+ +E  H+++ IV DKTGT+T G+PVV       N  L    +++A  E +SEHPLA+AIV YAK
Sbjct:  330 DGKIIKGMTAIDESMLTGESIPVEKNVDDTVIGSTMNKNGTITMTATKVGGDTALANIIKVVEEAQSSKAPIQRLADIISGYFVPIVVGIALLTFIVWITL------------VTPGTFEPALVASISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGEFVERTHQIDTIVLDKTGTITNGRPVVTDYH-GDNQTL----QLLATAEKDSEHPLAEAIVNYAK 540          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_STAAT (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=copA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.654e-51
Identity = 108/228 (47.37%), Postives = 152/228 (66.67%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G + + ESM+TGE+ PV K    TVIG T+N+NG + + AT+VG ++ALA I+++VE AQ +KAP+Q+ AD IS YFVP+V+ ++  T++ W                +  +F+ AL   ISV+VIACPCALGLATPT++MVGTG  A  G+L KGG+ +E  H+++ IV DKTGT+T G+PVV       N  L    +++A  E +SEHPLA+AIV YAK
Sbjct:  330 DGKIIKGMTAIDESMLTGESIPVEKNVDDTVIGSTMNKNGTITMTATKVGGDTALANIIKVVEEAQSSKAPIQRLADIISGYFVPIVVGIALLTFIVWITL------------VTPGTFEPALVASISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGEFVERTHQIDTIVLDKTGTITNGRPVVTDYH-GDNQTL----QLLATAEKDSEHPLAEAIVNYAK 540          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_STAAS (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain MSSA476) GN=copA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.654e-51
Identity = 108/228 (47.37%), Postives = 152/228 (66.67%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G + + ESM+TGE+ PV K    TVIG T+N+NG + + AT+VG ++ALA I+++VE AQ +KAP+Q+ AD IS YFVP+V+ ++  T++ W                +  +F+ AL   ISV+VIACPCALGLATPT++MVGTG  A  G+L KGG+ +E  H+++ IV DKTGT+T G+PVV       N  L    +++A  E +SEHPLA+AIV YAK
Sbjct:  330 DGKIIKGMTAIDESMLTGESIPVEKNVDDTVIGSTMNKNGTITMTATKVGGDTALANIIKVVEEAQSSKAPIQRLADIISGYFVPIVVGIALLTFIVWITL------------VTPGTFEPALVASISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGEFVERTHQIDTIVLDKTGTITNGRPVVTDYH-GDNQTL----QLLATAEKDSEHPLAEAIVNYAK 540          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_STAAE (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain Newman) GN=copA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.654e-51
Identity = 108/228 (47.37%), Postives = 152/228 (66.67%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G + + ESM+TGE+ PV K    TVIG T+N+NG + + AT+VG ++ALA I+++VE AQ +KAP+Q+ AD IS YFVP+V+ ++  T++ W                +  +F+ AL   ISV+VIACPCALGLATPT++MVGTG  A  G+L KGG+ +E  H+++ IV DKTGT+T G+PVV       N  L    +++A  E +SEHPLA+AIV YAK
Sbjct:  330 DGKIIKGMTAIDESMLTGESIPVEKNVDDTVIGSTMNKNGTITMTATKVGGDTALANIIKVVEEAQSSKAPIQRLADIISGYFVPIVVGIALLTFIVWITL------------VTPGTFEPALVASISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGEFVERTHQIDTIVLDKTGTITNGRPVVTDYH-GDNQTL----QLLATAEKDSEHPLAEAIVNYAK 540          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_STAAC (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain COL) GN=copA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.654e-51
Identity = 108/228 (47.37%), Postives = 152/228 (66.67%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G + + ESM+TGE+ PV K    TVIG T+N+NG + + AT+VG ++ALA I+++VE AQ +KAP+Q+ AD IS YFVP+V+ ++  T++ W                +  +F+ AL   ISV+VIACPCALGLATPT++MVGTG  A  G+L KGG+ +E  H+++ IV DKTGT+T G+PVV       N  L    +++A  E +SEHPLA+AIV YAK
Sbjct:  330 DGKIIKGMTAIDESMLTGESIPVEKNVDDTVIGSTMNKNGTITMTATKVGGDTALANIIKVVEEAQSSKAPIQRLADIISGYFVPIVVGIALLTFIVWITL------------VTPGTFEPALVASISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGEFVERTHQIDTIVLDKTGTITNGRPVVTDYH-GDNQTL----QLLATAEKDSEHPLAEAIVNYAK 540          
The following BLAST results are available for this feature:
BLAST of CN188173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
ATU2_SCHPO6.023e-5450.21Copper-transporting ATPase ccc2 OS=Schizosaccharom... [more]
COPA_STAHJ3.904e-5350.44Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAES9.616e-5249.12Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAEQ9.616e-5249.12Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAS12.798e-5146.32Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAW3.654e-5147.37Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAT3.654e-5147.37Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAS3.654e-5147.37Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAE3.654e-5147.37Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAC3.654e-5147.37Copper-exporting P-type ATPase A OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188173 ID=CN188173; Name=CN188173; organism=Citrus sinensis; type=EST; length=694bp
AGTCTTCAGATGGTTACGTTTTGTGGGGACAGAGCCATGTCTATGAGAGT
ATGATAACTGGAGAGGCAAGGCCAGTGGCTAAGAGGAAGGGTTATACAGT
AATTGGTGGCACTGTGAATGAGAATGGGGTGCTACATATTAAGGCAACAA
GGGTTGGATCAGAGAGTGCTCTTGCTCAAATTGTTCGACTTGTTGAATCA
GCTCAGATGGCTAAGGCTCCAGTTCAGAAGTTCGCTGATCGTATTTCAAA
ATACTTTGTGCCTCTGGTCATCATCCTGTCATTTTCGACATGGCTTGCTT
GGTTTTTAGCTGGAAAGTTCCATAGCTACCCGGAATCCTGGATACCATCT
TCGATGGATAGCTTTCAGCTTGCACTACAGTTTGGAATCTCTGTTATGGT
CATAGCGTGTCCATGTGCGCTAGGCCTAGCGACTCCAACTGCTGTAATGG
TTGGAACTGGAGTTGGGGCATCTCAAGGAGTACTGATTAAAGGGGGTCAG
GCCTTGGAAAGTGCACATAAGGTGAATTGCATTGTGTTTGACAAAACTGG
AACTCTGACAGTTGGAAAGCCAGTAGTTGTCAGCACAAAGCTTTTGAAAA
ATATGGTACTGAGAGACTTCTATGAAGTTGTTGCTGCAACTGAGGTTAAC
AGTGAGCACCCATTGGCGAAGGCTATTGTTGAATATGCCAAGAA
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