CN188173

Overview
NameCN188173
Unique NameCN188173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATKB_XANAC (Potassium-transporting ATPase B chain OS=Xanthomonas axonopodis pv. citri GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 58/232 (25.00%), Postives = 101/232 (43.53%), Query Frame = 3
Query:    6 SDGYVLWGQSHVYESMITGEARPVAKRKGYT---VIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            +DG ++ G + + E+ +TGE+ PV +  G     VIGGT   +  +  K T     S L +++ LVE A   K P +          + L ++L+  T     +     +    ++  ++D   L     I+++V   P  +G   P   + G     S  VL K G+A+E A  V+ ++ DKTGT+T G     +   L  +      +      +    P  K+IV+ A+
Sbjct:  145 ADGEIVRGVATINEAAVTGESAPVLREAGTDRSGVIGGTRVLSDEIVFKVTAEPGHSFLDRMIALVEGANRQKTPNE----------IALTLLLAAMTLTFLIVVASLPAIA-GFVGVTLDPLLL-----IALLVCLIPTTIGGLLPAIGIAGMNRALSANVLAKSGKAVEVAGDVDVLLLDKTGTITYGDRQATAFHPLAGVDRVQLRDAAMLASLADPTPEGKSIVKLAR 360          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATKB_PSEAE (Potassium-transporting ATPase B chain OS=Pseudomonas aeruginosa GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 61/233 (26.18%), Postives = 102/233 (43.78%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGS---ESALAQIVRLVESAQMAKAPVQKFAD--RISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V+ G + V E+ ITGE+ PV +  G      T N   V      R+G+   ES L +++ LVE A+  K P +   D   I    + L+++++   + A F  G                  L L F ++++V   P  +G       + G        V+ K G+A+E+A  V+ ++ DKTGT+T G     +      +  ++  E      +  + P  K+IVEY +
Sbjct:  153 DGEVIEGVAAVNEAAITGESAPVIRESGGDRSAVTGNTQVVSDWLLVRIGANPGESTLDRMIALVEGAKRQKTPNEVALDILLIGLTLIFLLVVVTLKPF-ALFAGGN-----------------LPLVFLVALLVTLIPTTIGGLLSAIGIAGMDRLVRLNVIAKSGRAVEAAGDVHVLLLDKTGTITFGNRRCSALYAAPGVSGKELAEGALLASLADDTPEGKSIVEYLR 367          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATKB_ANASL (Potassium-transporting ATPase B chain OS=Anabaena sp. (strain L31) GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 59/236 (25.00%), Postives = 103/236 (43.64%), Query Frame = 3
Query:    6 SDGYVLWGQSHVYESMITGEARPVAKRKGY----TVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGK---FHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            +DG V+ G + V ES ITGE+ PV K  G     +V GGT   +  L ++ T    +  + +++ LVE A+  K P +          V L ++L+  + +  F+      F  Y ++          + +   ++++V   P  +G       + G    A   V+   G+A+E+   VN +V DKTGT+T+G  +      +    +     V     V  + P  K+IV  A+
Sbjct:  163 ADGEVIMGVASVDESAITGESAPVLKESGSDIASSVTGGTRIISDELIVRVTADPGKGFIDRMIALVEGAERTKTPNE----------VALTVLLAVLSLVFLFVVATLPVFAYYADT---------PINVPILVALLVALIPTTIGGLLSAIGIAGMDRVAQFNVIATSGRAVEACGDVNTLVLDKTGTITLGNRLAEEFIPINGHSIEQVASVAWVASVFDDTPEGKSIVRLAE 379          
The following BLAST results are available for this feature:
BLAST of CN188173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
ATKB_XANAC6.305e-1125.00Potassium-transporting ATPase B chain OS=Xanthomon... [more]
ATKB_PSEAE6.305e-1126.18Potassium-transporting ATPase B chain OS=Pseudomon... [more]
ATKB_ANASL8.235e-1125.00Potassium-transporting ATPase B chain OS=Anabaena ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188173 ID=CN188173; Name=CN188173; organism=Citrus sinensis; type=EST; length=694bp
AGTCTTCAGATGGTTACGTTTTGTGGGGACAGAGCCATGTCTATGAGAGT
ATGATAACTGGAGAGGCAAGGCCAGTGGCTAAGAGGAAGGGTTATACAGT
AATTGGTGGCACTGTGAATGAGAATGGGGTGCTACATATTAAGGCAACAA
GGGTTGGATCAGAGAGTGCTCTTGCTCAAATTGTTCGACTTGTTGAATCA
GCTCAGATGGCTAAGGCTCCAGTTCAGAAGTTCGCTGATCGTATTTCAAA
ATACTTTGTGCCTCTGGTCATCATCCTGTCATTTTCGACATGGCTTGCTT
GGTTTTTAGCTGGAAAGTTCCATAGCTACCCGGAATCCTGGATACCATCT
TCGATGGATAGCTTTCAGCTTGCACTACAGTTTGGAATCTCTGTTATGGT
CATAGCGTGTCCATGTGCGCTAGGCCTAGCGACTCCAACTGCTGTAATGG
TTGGAACTGGAGTTGGGGCATCTCAAGGAGTACTGATTAAAGGGGGTCAG
GCCTTGGAAAGTGCACATAAGGTGAATTGCATTGTGTTTGACAAAACTGG
AACTCTGACAGTTGGAAAGCCAGTAGTTGTCAGCACAAAGCTTTTGAAAA
ATATGGTACTGAGAGACTTCTATGAAGTTGTTGCTGCAACTGAGGTTAAC
AGTGAGCACCCATTGGCGAAGGCTATTGTTGAATATGCCAAGAA
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