CN188173

Overview
NameCN188173
Unique NameCN188173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_BACSU (Copper-exporting P-type ATPase A OS=Bacillus subtilis GN=copA PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 9.000e-50
Identity = 107/228 (46.93%), Postives = 146/228 (64.04%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V+ G+S V ESMITGE+ PV K  G +V G TVN NG L IKA  VG ++AL+ I+++VE AQ +KAP+Q+ AD+IS  FVP+V+ ++  T+L W+L          W  ++   F  A+   I+V+VIACPCALGLATPT++M G+G  A  G+L KGG+ LE  H+++ IV DKTGT+T GKP +           +D  +  AA E  SEHPL +AI+   K
Sbjct:  334 DGEVVEGRSAVDESMITGESLPVDKNPGDSVTGSTVNANGFLKIKAVNVGKDTALSHIIKIVEEAQGSKAPIQRLADQISGIFVPIVLGIAVLTFLIWYL----------W--AAPGDFAEAISKFIAVLVIACPCALGLATPTSIMAGSGRAAEFGILFKGGEHLEKTHRLDTIVLDKTGTVTNGKPRLTDAIPFGRFEEKDLLQFAAAAETGSEHPLGEAIIAGVK 549          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATCS_SYNE7 (Cation-transporting ATPase pacS OS=Synechococcus elongatus (strain PCC 7942) GN=pacS PE=3 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.175e-49
Identity = 110/232 (47.41%), Postives = 153/232 (65.95%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVV----AATEVNSEHPLAKAIVEYAK 692
            DG V+ G+S V ESM+TGE+ PV K+ G  VIG T+N+ G L I+ATRVG E+ LAQIV+LV+ AQ +KAP+Q+ AD+++ +FVP VI ++  T++ WF          +WI     +  LAL   + V++IACPCALGLATPT++MVGTG GA  G+LIK  ++LE A  +  ++ DKTGTLT G+P V     + +   RD  + +    A+ E  SEHPLA+AIV Y +
Sbjct:  271 DGEVIDGRSTVDESMVTGESLPVQKQVGDEVIGATLNKTGSLTIRATRVGRETFLAQIVQLVQQAQASKAPIQRLADQVTGWFVPAVIAIAILTFVLWF----------NWI----GNVTLALITAVGVLIIACPCALGLATPTSIMVGTGKGAEYGILIKSAESLELAQTIQTVILDKTGTLTQGQPSVTDFLAIGD---RDQQQTLLGWAASLENYSEHPLAEAIVRYGE 485          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_ARCFU (Probable copper-exporting P-type ATPase A OS=Archaeoglobus fulgidus GN=copA PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.005e-49
Identity = 109/227 (48.02%), Postives = 143/227 (63.00%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYA 689
            DG V+ G+S+V ESMI+GE  PV K KG  V G T+N  GVL I+ATRVG E+ LAQIV+LVE A  +K P+Q+ AD++  YF+P V++++ S ++ W+     H+               A    I+V+V+ACPCA GLATPTA+ VG G GA  G+LIK   ALE A KV  ++FDKTGTLT GKP V     L N   R+   + A  E  SEHP+A+AIV+ A
Sbjct:  260 DGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIA--HA-----------PLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLAAIAERRSEHPIAEAIVKKA 472          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATCU_SINMW (Copper-transporting P-type ATPase OS=Sinorhizobium medicae (strain WSM419) GN=actP PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.467e-49
Identity = 106/228 (46.49%), Postives = 147/228 (64.47%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V  G S+V ESMITGE  PV K     VIGGT+N+ G +  KAT+VGS++ LAQI+RLVE+AQ +K P+Q   DR++ +FVP+VI+ +  T+ AW++ G          PS   SF  AL   ++V++IACPCA+GLATPT++MVGTG  A  G+L + G+AL+S    + +  DKTGTLT G+P +      +     +   +VA+ E  SEHP+A+AIV  AK
Sbjct:  350 DGTVTDGSSYVDESMITGEPVPVQKATDSAVIGGTINKTGSITFKATKVGSDTLLAQIIRLVEAAQGSKLPIQALVDRVTAWFVPVVILAALLTFAAWYVLG----------PSPALSF--ALVNAVAVLIIACPCAMGLATPTSIMVGTGRAAELGILFRKGEALQSLRDADVVAVDKTGTLTKGRPELTDLVAAEGFEPDEVLCLVASLETLSEHPIAEAIVSAAK 565          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATCS_SYNY3 (Cation-transporting ATPase pacS OS=Synechocystis sp. (strain PCC 6803) GN=pacS PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.834e-49
Identity = 106/231 (45.89%), Postives = 149/231 (64.50%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVV---AATEVNSEHPLAKAIVEYAK 692
            DG V+ G S V ES++TGE+ PV K  G  VIG T+N++G L I+ +++G +S LAQI++LV+ AQ +KAP+Q F DRI+ +FVP VI+++ + +  W+L              +  +  LA+   + V++IACPCALGLATPT+VMVGTG GA  GVLIK   +LE A K+  IV DKTGTLT GKP V +   L      +  +++   A+ E  SEHPLA+A+V Y +
Sbjct:  265 DGVVVAGNSTVDESLVTGESFPVDKTVGTEVIGATLNKSGSLDIQVSKLGQDSVLAQIIQLVQQAQASKAPIQHFVDRITHWFVPTVIVVAIAAFCIWWL--------------TTGNITLAVLTLVEVLIIACPCALGLATPTSVMVGTGKGAEYGVLIKEASSLEMAEKLTAIVLDKTGTLTQGKPSVTNFFTLSPTSTEESLQLIQWAASVEQYSEHPLAEAVVNYGQ 481          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATCU1_RHIME (Copper-transporting ATPase 1 OS=Rhizobium meliloti GN=actP1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.619e-49
Identity = 103/228 (45.18%), Postives = 147/228 (64.47%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG VL G S+V ESMITGE  PV K  G  V+GGT+N+NG    +AT+VG ++ LAQI+++VE+AQ +K P+Q   D+++ +FVP VI+++  T+ AW++ G          PS   +F  AL   ++V++IACPCA+GLATPT++MVGTG  A  G+L + G+AL+S  + + I  DKTGTLT G+P +            +    VA+ E  SEHP+A+AIV  AK
Sbjct:  349 DGTVLDGNSYVDESMITGEPVPVQKAAGAEVVGGTINKNGSFTFRATKVGGDTLLAQIIKMVETAQGSKLPIQALVDKVTAWFVPAVILVAVLTFAAWYVFG----------PSPALTF--ALVNAVAVLIIACPCAMGLATPTSIMVGTGRAAELGILFRKGEALQSLREADVIALDKTGTLTKGRPELTDIVPADGFEADEVLSFVASLEALSEHPIAEAIVSAAK 564          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATU2_YEAST (Copper-transporting ATPase OS=Saccharomyces cerevisiae GN=CCC2 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.939e-48
Identity = 104/235 (44.26%), Postives = 154/235 (65.53%), Query Frame = 3
Query:    6 SDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAW-FLAGKFHSYPESWIPSSM-DSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLK------NMVLRDFYEVVAATEVNSEHPLAKAIVEY 686
            +DG +  G+S + ES++TGE+  V K+ G+ VI G+VN  G  + + T VG E+ LA I+++++ AQ++KAP+Q +AD ++  FVP ++IL+  T+  W F+     + P ++  ++  D+F + LQ   SV+++ACPCALGLATPTA+MVGTGVGA  GVLIKGG+ LE  + +   VFDKTGTLT G  VV   K LK      N+   +    + ATE  S+HP++KAI+ Y
Sbjct:  447 ADGIITRGESEIDESLMTGESILVPKKTGFPVIAGSVNGPGHFYFRTTTVGEETKLANIIKVMKEAQLSKAPIQGYADYLASIFVPGILILAVLTFFIWCFILNISANPPVAFTANTKADNFFICLQTATSVVIVACPCALGLATPTAIMVGTGVGAQNGVLIKGGEVLEKFNSITTFVFDKTGTLTTGFMVV--KKFLKDSNWVGNVDEDEVLACIKATESISDHPVSKAIIRY 679          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATCU2_RHIME (Copper-transporting ATPase 2 OS=Rhizobium meliloti GN=actP2 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.424e-48
Identity = 102/228 (44.74%), Postives = 145/228 (63.60%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V+ G S+V E+MITGE  PV K     V+GGT+N+ G +  KAT+VGS++ LAQI++LVE+AQ +K P+Q   DR++ +FVP VI+ +  T+ AW+  G          PS   SF  AL   ++V++IACPCA+GLATPT++MVGTG  A  G+L + G+AL+     + +  DKTGTLT G+P +      +     +   +VA+ E  SEHP+A+AIV  AK
Sbjct:  350 DGTVIDGSSYVDEAMITGEPLPVQKTADSAVVGGTINKTGSITFKATKVGSDTLLAQIIKLVETAQGSKLPIQALVDRVTGWFVPAVILAAVLTFAAWYTFG----------PSPALSF--ALVNAVAVLIIACPCAMGLATPTSIMVGTGRAAELGILFRKGEALQRLRDADVVALDKTGTLTKGRPELTDLVAAEGFEADEVLFLVASLETLSEHPIAEAIVSAAK 565          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CTPV_MYCTU (Probable cation-transporting ATPase V OS=Mycobacterium tuberculosis GN=ctpV PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.100e-47
Identity = 110/231 (47.62%), Postives = 151/231 (65.37%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGK----PVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYA 689
            DG V  G++ V ESM+TGE+ PV K  G  V G TVN +G+L ++AT VG+++ALAQIVRLVE AQ  KAPVQ+ ADR+S  FVP VI ++ +T+  W L     + P + + ++           ++V++IACPCALGLATPTA+MVGTG GA  G+L+KGG+ LE++ K++ +VFDKTGTLT  +     V+   +   + VLR    + AA E  SEHP+  AIV  A
Sbjct:  297 DGEVTDGRAAVDESMLTGESVPVEKTAGDRVAGATVNLDGLLTVRATAVGADTALAQIVRLVEQAQGDKAPVQRLADRVSAVFVPAVIGVAVATFAGWTLIA---ANPVAGMTAA-----------VAVLIIACPCALGLATPTAIMVGTGRGAELGILVKGGEVLEASKKIDTVVFDKTGTLTRARMRVTDVIAGQRRQPDQVLR----LAAAVESGSEHPIGAAIVAAA 509          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: SILP_SALTY (Putative cation-transporting P-type ATPase OS=Salmonella typhimurium GN=silP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.201e-47
Identity = 102/228 (44.74%), Postives = 145/228 (63.60%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V+ G++ V ESM+TGE+ PV K +G  VIGGT+N+ G L I+A +VG E+ L++IV++V  AQ ++AP+Q+ AD +S +FVPLVI+++   ++ W + G     PE  +   + +        +SV++IACPCALGLATP ++MVG G GA  GVLIK  +ALE   KV+ +V DKTGTLT G P V     L          V AA +  S+HPL  A+V+ A+
Sbjct:  346 DGIVVEGKTTVDESMVTGESMPVTKTEGEPVIGGTINQTGSLIIRAEKVGDETMLSRIVQMVADAQRSRAPIQRMADSVSGWFVPLVILIAVVAFMIWSVWG-----PEPRMAHGLIA-------AVSVLIIACPCALGLATPMSIMVGVGKGAQAGVLIKNAEALERLEKVDTLVVDKTGTLTEGSPTVTGIISLNPGGETSLLRVTAAVDKGSQHPLGMAVVKAAQ 561          
The following BLAST results are available for this feature:
BLAST of CN188173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
COPA_BACSU9.000e-5046.93Copper-exporting P-type ATPase A OS=Bacillus subti... [more]
ATCS_SYNE71.175e-4947.41Cation-transporting ATPase pacS OS=Synechococcus e... [more]
COPA_ARCFU2.005e-4948.02Probable copper-exporting P-type ATPase A OS=Archa... [more]
ATCU_SINMW4.467e-4946.49Copper-transporting P-type ATPase OS=Sinorhizobium... [more]
ATCS_SYNY35.834e-4945.89Cation-transporting ATPase pacS OS=Synechocystis s... [more]
ATCU1_RHIME7.619e-4945.18Copper-transporting ATPase 1 OS=Rhizobium meliloti... [more]
ATU2_YEAST4.939e-4844.26Copper-transporting ATPase OS=Saccharomyces cerevi... [more]
ATCU2_RHIME8.424e-4844.74Copper-transporting ATPase 2 OS=Rhizobium meliloti... [more]
CTPV_MYCTU1.100e-4747.62Probable cation-transporting ATPase V OS=Mycobacte... [more]
SILP_SALTY3.201e-4744.74Putative cation-transporting P-type ATPase OS=Salm... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188173 ID=CN188173; Name=CN188173; organism=Citrus sinensis; type=EST; length=694bp
AGTCTTCAGATGGTTACGTTTTGTGGGGACAGAGCCATGTCTATGAGAGT
ATGATAACTGGAGAGGCAAGGCCAGTGGCTAAGAGGAAGGGTTATACAGT
AATTGGTGGCACTGTGAATGAGAATGGGGTGCTACATATTAAGGCAACAA
GGGTTGGATCAGAGAGTGCTCTTGCTCAAATTGTTCGACTTGTTGAATCA
GCTCAGATGGCTAAGGCTCCAGTTCAGAAGTTCGCTGATCGTATTTCAAA
ATACTTTGTGCCTCTGGTCATCATCCTGTCATTTTCGACATGGCTTGCTT
GGTTTTTAGCTGGAAAGTTCCATAGCTACCCGGAATCCTGGATACCATCT
TCGATGGATAGCTTTCAGCTTGCACTACAGTTTGGAATCTCTGTTATGGT
CATAGCGTGTCCATGTGCGCTAGGCCTAGCGACTCCAACTGCTGTAATGG
TTGGAACTGGAGTTGGGGCATCTCAAGGAGTACTGATTAAAGGGGGTCAG
GCCTTGGAAAGTGCACATAAGGTGAATTGCATTGTGTTTGACAAAACTGG
AACTCTGACAGTTGGAAAGCCAGTAGTTGTCAGCACAAAGCTTTTGAAAA
ATATGGTACTGAGAGACTTCTATGAAGTTGTTGCTGCAACTGAGGTTAAC
AGTGAGCACCCATTGGCGAAGGCTATTGTTGAATATGCCAAGAA
back to top