CN188173

Overview
NameCN188173
Unique NameCN188173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: AHM6_ARATH (Putative copper-transporting ATPase PAA1 OS=Arabidopsis thaliana GN=PAA1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.717e-45
Identity = 108/237 (45.57%), Postives = 145/237 (61.18%), Query Frame = 3
Query:    6 SDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKN--MVLRDFYEVV------AATEVNSEHPLAKAIVEYAK 692
            +DG V  G+S + ES  TGE  PV K  G  V  G++N NG L ++  R G E+A+  I+RLVE AQ  +APVQ+  D+++  F   V+ LS +T+  W L G  H  P +    S  S  LALQ   SV+V+ACPCALGLATPTA++VGT +GA +G+L++GG  LE    V+ +VFDKTGTLT G PVV    + +N    L D +  V      AA E N+ HP+ KAIV+ A+
Sbjct:  423 ADGVVKSGRSTIDESSFTGEPLPVTKESGSQVAAGSINLNGTLTVEVHRSGGETAVGDIIRLVEEAQSREAPVQQLVDKVAGRFTYGVMALSAATFTFWNLFGA-HVLPSALHNGSPMS--LALQLSCSVLVVACPCALGLATPTAMLVGTSLGARRGLLLRGGDILEKFSLVDTVVFDKTGTLTKGHPVVTEVIIPENPRHNLNDTWSEVEVLMLAAAVESNTTHPVGKAIVKAAR 656          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_VIBCH (Copper-exporting P-type ATPase A OS=Vibrio cholerae GN=copA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.942e-44
Identity = 100/231 (43.29%), Postives = 145/231 (62.77%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLL---KNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V  G S++ ESM+TGE  PV K  G  V  GT+N++G L I AT +G+++ LA+I+++V  AQ +K  + + AD+IS  FVP+V++++  +   W+L G          P    S+ L +    +V++IACPCALGLATP ++ VG G  A  G+LI+    L++A +V+ +VFDKTGTLT+GKP + S  +L   +N +L   Y    A E  SEHPLAKAI +YAK
Sbjct:  433 DGVVSTGHSYLDESMLTGEPIPVLKEAGAKVAAGTLNQDGSLVITATGIGAQTMLARIIQMVRQAQSSKPAMARLADQISSVFVPVVVVIAILSAALWYLYG----------PDPKASYMLVV--ATTVLIIACPCALGLATPLSITVGIGKAAEMGILIRDANVLQTASQVDTVVFDKTGTLTLGKPSIQSLHVLQGDENQLLALAY----ALEQQSEHPLAKAICDYAK 647          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATCU_RHILV (Copper-transporting P-type ATPase OS=Rhizobium leguminosarum bv. viciae GN=actP PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.313e-44
Identity = 100/228 (43.86%), Postives = 140/228 (61.40%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG VL GQS V ESMI+GE  PV K KG  + GGT+N+NG   + A +VG+++ L++IV +V  AQ ++AP+Q   DR+S  FVP V+ ++   +LAW   G     PE  + +        L   ++V++IACPCALGLATP ++M+ TG GA +GVLIK  +ALE   K + ++ DKTGTLT GKP +        +       + A+ E  SEHPLA+AIV  A+
Sbjct:  365 DGSVLEGQSTVDESMISGEPLPVEKSKGDPLTGGTINKNGTFVMSAEKVGADTVLSRIVDMVAKAQRSRAPIQGAVDRVSAVFVPAVVAVALLAFLAWAAIG-----PEPRMAN-------GLLAAVAVLIIACPCALGLATPMSIMIATGRGAGEGVLIKDAEALERFSKGDTLIVDKTGTLTEGKPKLTDIAAFGRVGEDRLLSLAASLERGSEHPLAEAIVSGAE 580          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_HELPJ (Copper-transporting ATPase OS=Helicobacter pylori J99 GN=copA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.380e-44
Identity = 96/228 (42.11%), Postives = 143/228 (62.72%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G+  + ESM++GEA PV K+ G  V  GT+N N    +KAT+    S L+QI+ ++ +AQ +KA + + AD++S  FVP VI ++   ++ W +       P+ W      +F+ AL+  +SV+VI+CPCALGLATP +++V     +S G+  K  ++LE A  VN IVFDKTGTLT GKPVV S  +  N+ L +   + ++ E +SEH +AK IVEYAK
Sbjct:  266 DGEIIEGEGELDESMLSGEALPVYKKVGDKVFSGTLNSNTSFLMKATQDNKNSTLSQIIEMIHNAQSSKAEISRLADKVSSVFVPSVIAIAVLAFVVWLIIAP---KPDFWW-----NFRTALEVFVSVLVISCPCALGLATPMSILVANQKASSLGLFFKDAKSLEKARLVNTIVFDKTGTLTNGKPVVKS--IHSNIELLELLSLASSIEKSSEHVIAKGIVEYAK 483          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA2_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.663e-43
Identity = 96/228 (42.11%), Postives = 140/228 (61.40%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G+  + ESM++GEA PV K+ G  V  GT N +    +KAT+    S L+QIV ++ +AQ +KA + + AD++S  FVP VI ++   ++ W +       P+ W      +F +AL+  +SV+VI+CPCALGLATP +++V     +S G+  K  ++LE A  VN IVFDKTGTLT GKPVV S     N+ L +   +  + E +SEH +AK IVEYAK
Sbjct:  262 DGEIIEGEGELDESMLSGEALPVYKKVGDKVFSGTFNSHTSFLMKATQDNKNSTLSQIVEMIHNAQSSKAEISRLADKVSSVFVPSVIAIAILAFVVWLIIAP---KPDFWW-----NFGIALEVFVSVLVISCPCALGLATPMSILVANQKASSLGLFFKDAKSLEKARLVNTIVFDKTGTLTNGKPVVKSVH--SNIELLELLSLAGSIEKSSEHVIAKGIVEYAK 479          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA3_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.392e-42
Identity = 94/228 (41.23%), Postives = 140/228 (61.40%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G+  + ESM++GEA PV K+ G  V  GT+N +    +KAT+    S L+QI+ ++ +AQ +KA + + AD++S  FVP VI ++   ++ W +       P+ W      +F +AL+  +SV+VI+CPCALGLATP +++V     +S G+  K  ++LE A  VN IVFDKTGTLT GKPVV S      + L +   +  + E +SEH +AK IVEYAK
Sbjct:  266 DGEIIEGEGELDESMLSGEALPVYKKVGDKVFSGTLNSHTSFLMKATQNNKNSTLSQIIEMIHNAQSSKAEISRLADKVSSVFVPSVIAIAILAFVVWLIIAP---KPDFWW-----NFGIALEVFVSVLVISCPCALGLATPMSILVANQKASSLGLFFKDAKSLEKARLVNTIVFDKTGTLTNGKPVVKSVH--SKIELLELLSLAGSIEKSSEHVIAKGIVEYAK 483          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.374e-42
Identity = 95/228 (41.67%), Postives = 139/228 (60.96%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G+  + ESM++GEA PV K+ G  V  GT N +    +KAT+    S L+QI+ ++ +AQ +KA + + AD++S  FVP VI +S   ++ W +       P+ W      +F +AL+  +SV+VI+CPCALGLATP +++V     +S G+  K  ++LE A  VN IVFDKTGTLT GKPVV S      + L +   +  + E +SEH +AK IVEYAK
Sbjct:  266 DGEIIEGEGELDESMLSGEALPVYKKVGDKVFSGTFNSHTSFLMKATQNNKNSTLSQIIEMIYNAQSSKAEISRLADKVSSVFVPSVIAISILAFVVWLIIAP---KPDFWW-----NFGIALEVFVSVLVISCPCALGLATPMSILVANQKASSLGLFFKDAKSLEKARLVNTIVFDKTGTLTNGKPVVKSVH--SKIELLELLSLALSIEKSSEHVIAKGIVEYAK 483          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA1_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.477e-41
Identity = 94/228 (41.23%), Postives = 138/228 (60.53%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G+  + ESM++GEA PV K+ G  V  GT N +    +KAT+    S L+QIV ++ +AQ +KA + + AD++S  FVP VI ++   ++ W +       P+ W      +F +AL+  +SV+VI+CPCALGLAT  +++V     +S G+  K  ++LE A  VN IVFDKTGTLT GKPVV S      + L +   +  + E +SEH +AK IVEYAK
Sbjct:  266 DGEIIEGEGELDESMLSGEALPVYKKVGDKVFSGTFNSHTSFLMKATQNNKNSTLSQIVEMIHNAQSSKAEISRLADKVSSVFVPSVIAIAILAFVVWLIIAP---KPDFWW-----NFGIALEVFVSVLVISCPCALGLATLMSILVANQKASSLGLFFKDAKSLEKARLVNTIVFDKTGTLTNGKPVVKSVH--SKIELLELLSLANSIEKSSEHVIAKGIVEYAK 483          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CTPA_MYCLE (Cation-transporting P-type ATPase A OS=Mycobacterium leprae GN=ctpA PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 7.637e-41
Identity = 99/225 (44.00%), Postives = 134/225 (59.56%), Query Frame = 3
Query:    3 SSDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAI 677
            ++DG V+ G + V  S ITGEA+PV    G  VIGGTV  NG L ++A  VG E+ LA +VRLVE AQ   A  Q+ ADRI+  FVP V  ++  T + W +AG   S P+    ++           I+V+VIACPCALGLATPTA+MV +G GA  G+L+KG ++ E+   V+ +VFDKTGTLT G+  V +          +  ++ A  E  SEH +A AI
Sbjct:  265 AADGLVIDGSATVSMSPITGEAKPVRVNPGAQVIGGTVVLNGRLIVEAAAVGDETQLAGMVRLVEQAQQQNANAQRLADRIASVFVPCVFAVAALTAVGWLIAG---SGPDRVFSAA-----------IAVLVIACPCALGLATPTAMMVASGRGAQLGILLKGHESFEATRAVDTVVFDKTGTLTTGQLKVSAVTAAPGWQANEVLQMAATVESASEHAVALAI 475          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CTPB_MYCLE (Cation-transporting P-type ATPase B OS=Mycobacterium leprae GN=ctpB PE=3 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.303e-40
Identity = 98/226 (43.36%), Postives = 134/226 (59.29%), Query Frame = 3
Query:    3 SSDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIV 680
            ++DG V+ G + +  S ITGEARPV      TV+GGT   +G L I+AT VG ++  A +VRLVE AQ+ KA VQ  ADRI+  FVP+V +++     +W LAG               S   A    + V+VIACPC LGLATPTA+MV +G GA  G+ IKG +ALE+ + ++ +VFDKTGTLT+G+  V +          +   + +A E  SEH +A AIV
Sbjct:  280 TADGVVIDGTATIDMSAITGEARPVHASPASTVVGGTTVLDGRLVIEATAVGGDTQFAAMVRLVEDAQVQKARVQHLADRIAAVFVPMVFVIAGLAGASWLLAGA--------------SPDRAFSVVLGVLVIACPCTLGLATPTAMMVASGRGAQLGIFIKGYRALETINAIDTVVFDKTGTLTLGQLSVSTVTSTGGWCSGEVLALASAVEAASEHSVATAIV 491          
The following BLAST results are available for this feature:
BLAST of CN188173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
AHM6_ARATH8.717e-4545.57Putative copper-transporting ATPase PAA1 OS=Arabid... [more]
COPA_VIBCH1.942e-4443.29Copper-exporting P-type ATPase A OS=Vibrio cholera... [more]
ATCU_RHILV3.313e-4443.86Copper-transporting P-type ATPase OS=Rhizobium leg... [more]
COPA_HELPJ7.380e-4442.11Copper-transporting ATPase OS=Helicobacter pylori ... [more]
COPA2_HELPY3.663e-4342.11Copper-transporting ATPase OS=Helicobacter pylori ... [more]
COPA3_HELPY1.392e-4241.23Copper-transporting ATPase OS=Helicobacter pylori ... [more]
COPA_HELPY2.374e-4241.67Copper-transporting ATPase OS=Helicobacter pylori ... [more]
COPA1_HELPY4.477e-4141.23Copper-transporting ATPase OS=Helicobacter pylori ... [more]
CTPA_MYCLE7.637e-4144.00Cation-transporting P-type ATPase A OS=Mycobacteri... [more]
CTPB_MYCLE1.303e-4043.36Cation-transporting P-type ATPase B OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188173 ID=CN188173; Name=CN188173; organism=Citrus sinensis; type=EST; length=694bp
AGTCTTCAGATGGTTACGTTTTGTGGGGACAGAGCCATGTCTATGAGAGT
ATGATAACTGGAGAGGCAAGGCCAGTGGCTAAGAGGAAGGGTTATACAGT
AATTGGTGGCACTGTGAATGAGAATGGGGTGCTACATATTAAGGCAACAA
GGGTTGGATCAGAGAGTGCTCTTGCTCAAATTGTTCGACTTGTTGAATCA
GCTCAGATGGCTAAGGCTCCAGTTCAGAAGTTCGCTGATCGTATTTCAAA
ATACTTTGTGCCTCTGGTCATCATCCTGTCATTTTCGACATGGCTTGCTT
GGTTTTTAGCTGGAAAGTTCCATAGCTACCCGGAATCCTGGATACCATCT
TCGATGGATAGCTTTCAGCTTGCACTACAGTTTGGAATCTCTGTTATGGT
CATAGCGTGTCCATGTGCGCTAGGCCTAGCGACTCCAACTGCTGTAATGG
TTGGAACTGGAGTTGGGGCATCTCAAGGAGTACTGATTAAAGGGGGTCAG
GCCTTGGAAAGTGCACATAAGGTGAATTGCATTGTGTTTGACAAAACTGG
AACTCTGACAGTTGGAAAGCCAGTAGTTGTCAGCACAAAGCTTTTGAAAA
ATATGGTACTGAGAGACTTCTATGAAGTTGTTGCTGCAACTGAGGTTAAC
AGTGAGCACCCATTGGCGAAGGCTATTGTTGAATATGCCAAGAA
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