CN188173

Overview
NameCN188173
Unique NameCN188173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CTPB_MYCTU (Cation-transporting P-type ATPase B OS=Mycobacterium tuberculosis GN=ctpB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 101/231 (43.72%), Postives = 139/231 (60.17%), Query Frame = 3
Query:    3 SSDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLL--KNMVLRDFYEVV---AATEVNSEHPLAKAIV 680
            ++DG V+ G + +  S +TGEA+PV      +V+GGTV  +G L I+AT VG+++  A +VRLVE AQ  KA  Q+ AD I+  FVP+V +++     AW ++G                   A    + V+VIACPCALGLATPTA+MV +G GA  G+ IKG +ALE+   ++ +VFDKTGTLTVG+ + VST  +       RD  EV+   AA E  SEH +A AIV
Sbjct:  281 AADGVVVDGSAAIDMSAMTGEAKPVRAYPAASVVGGTVVMDGRLVIEATAVGADTQFAAMVRLVEQAQTQKARAQRLADHIAGVFVPVVFVIAGLAGAAWLVSGA--------------GADRAFSVTLGVLVIACPCALGLATPTAMMVASGRGAQLGIFIKGYRALETIRSIDTVVFDKTGTLTVGQ-LAVSTVTMAGSGTSERDREEVLGLAAAVESASEHAMAAAIV 496          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CTPB_MYCBO (Cation-transporting P-type ATPase B OS=Mycobacterium bovis GN=ctpB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 101/231 (43.72%), Postives = 139/231 (60.17%), Query Frame = 3
Query:    3 SSDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLL--KNMVLRDFYEVV---AATEVNSEHPLAKAIV 680
            ++DG V+ G + +  S +TGEA+PV      +V+GGTV  +G L I+AT VG+++  A +VRLVE AQ  KA  Q+ AD I+  FVP+V +++     AW ++G                   A    + V+VIACPCALGLATPTA+MV +G GA  G+ IKG +ALE+   ++ +VFDKTGTLTVG+ + VST  +       RD  EV+   AA E  SEH +A AIV
Sbjct:  281 AADGVVVDGSAAIDMSAMTGEAKPVRAYPAASVVGGTVVMDGRLVIEATAVGADTQFAAMVRLVEQAQTQKARAQRLADHIAGVFVPVVFVIAGLAGAAWLVSGA--------------GADRAFSVTLGVLVIACPCALGLATPTAMMVASGRGAQLGIFIKGYRALETIRSIDTVVFDKTGTLTVGQ-LAVSTVTMAGSGTSERDREEVLGLAAAVESASEHAMAAAIV 496          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_HELFE (Copper-transporting ATPase OS=Helicobacter felis GN=copA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 85/228 (37.28%), Postives = 136/228 (59.65%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG +  G++ V ESM++GE+ PV K++G  +  GT+N      ++AT   ++S LA+I+ L+  AQ +KAP+ + AD+++  FVP+VI ++   +L W + G                F  AL+  I+++VI+CPCALGLATP A++V     +  G+  K   +LE A  VN ++FDKTGTLT+G P+V   ++ + +   +   + A+ E  SEH +AK IV +AK
Sbjct:  259 DGVLFKGEAEVDESMLSGESLPVYKKEGMDLFAGTLNTTTTFQMRATHTKAQSTLAKILTLIAKAQGSKAPIARLADKVAGVFVPIVIGIASIAFLVWLVLG---------------DFTRALEVFIAILVISCPCALGLATPMALLVAQKEASLLGLFFKDAVSLEKAKNVNHVIFDKTGTLTLGTPLVQEVRVAEGVDRLELLTLCASLEAQSEHVIAKGIVAHAK 471          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CTPA_MYCTU (Cation-transporting P-type ATPase A OS=Mycobacterium tuberculosis GN=ctpA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 94/225 (41.78%), Postives = 131/225 (58.22%), Query Frame = 3
Query:    3 SSDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAI 677
            ++DG  + G + V  S +TGEA+P   R G  VIGGT   +G L ++A  VG+++  A +VRLVE AQ  KA  Q+ ADRIS  FVP V++++  T   W +AG     P+            A+   ++V+VIACPCALGLATPTA+MV +G GA  G+ +KG ++LE+   V+ +VFDKTGTLT G+  V +              + A  E  SEH +A AI
Sbjct:  278 AADGLAVDGSAAVDMSAMTGEAKPTRVRPGGQVIGGTTVLDGRLIVEAAAVGADTQFAGMVRLVEQAQAQKADAQRLADRISSVFVPAVLVIAALTAAGWLIAG---GQPDR-----------AVSAALAVLVIACPCALGLATPTAMMVASGRGAQLGIFLKGYKSLEATRAVDTVVFDKTGTLTTGRLQVSAVTAAPGWEADQVLALAATVEAASEHSVALAI 488          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CADA_STAAR (Probable cadmium-transporting ATPase OS=Staphylococcus aureus (strain MRSA252) GN=cadA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 87/229 (37.99%), Postives = 137/229 (59.83%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMV-LRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G S V ++ ITGE+ PVAK     V  GT+NE G+L +K T+   ++ +++I+ LVE AQ  +AP Q F D+ +KY+ P++++          +A      P  +   S D++   +  G++V+V+ CPCAL ++TP +++   G  A +GVLIKGG  LE    +  I FDKTGTLT G PVV   K+L + V  ++ + ++ A E  S+HPLA AI++ A+
Sbjct:  250 DGIIINGVSAVNQAAITGESVPVAKTVDDEVFAGTLNEEGLLEVKITKYVEDTTISKIIHLVEEAQGERAPAQAFVDKFAKYYTPIIMV----------IAALVAVVPPLFFGGSWDTW---VYQGLAVLVVGCPCALVISTPISIVSAIGNAAKKGVLIKGGVYLEELGAIKAIAFDKTGTLTKGVPVVTDFKVLNDQVEEKELFSIITALEYRSQHPLASAIMKKAE 465          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CADA2_STAAU (Probable cadmium-transporting ATPase OS=Staphylococcus aureus GN=cadA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.473e-39
Identity = 87/229 (37.99%), Postives = 136/229 (59.39%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMV-LRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG ++ G S V ++ ITGE+ PVAK     V  GT+NE G+L +K T+   ++ +++I+ LVE AQ  +AP Q F D+ +KY+ P++++          +A      P  +   S D++   +  G++V+V+ CPCAL + TP +++   G  A +GVLIKGG  LE    +  I FDKTGTLT G PVV   K+L + V  ++ + ++ A E  S+HPLA AI++ A+
Sbjct:  328 DGIIINGVSAVNQAAITGESVPVAKTVDDEVFAGTLNEEGLLEVKITKYVEDTTISKIIHLVEEAQGERAPAQAFVDKFAKYYTPIIMV----------IAALVAVVPPLFFGGSWDTW---VYQGLAVLVVGCPCALVITTPISIVSAIGNAAKKGVLIKGGVYLEELGAIKAIAFDKTGTLTKGVPVVTDFKVLNDQVEEKELFSIITALEYRSQHPLASAIMKKAE 543          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_ECOLI (Copper-exporting P-type ATPase A OS=Escherichia coli (strain K12) GN=copA PE=1 SV=4)

HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39
Identity = 87/227 (38.33%), Postives = 138/227 (60.79%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYA 689
            DG +  G++ + E+M+TGE  P  K +G +V  GTV ++G +  +A+ VGS + L++I+R+V  AQ +K  + + AD+IS  FVP+V++++  +   W+  G          P+    + L +    +V++IACPCALGLATP +++ G G  A  GVL++   AL+ A  ++ +VFDKTGTLT GKP VV+ K   ++       + AA E  S HPLA+AI++ A
Sbjct:  358 DGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFG----------PAPQIVYTLVI--ATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLARAILDKA 572          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_ECO57 (Copper-exporting P-type ATPase A OS=Escherichia coli O157:H7 GN=copA PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.219e-38
Identity = 87/227 (38.33%), Postives = 137/227 (60.35%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYA 689
            DG +  G++ + E+M+TGE  P  K +G +V  GTV ++G +  +A+ VGS + L++I+R+V  AQ +K  + + AD+IS  FVP+V++++  +   W+  G          P+    + L +    +V++IACPCALGLATP +++ G G  A  GVL++   AL+ A  ++ +VFDKTGTLT GKP VV+ K   +        + AA E  S HPLA+AI++ A
Sbjct:  358 DGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFG----------PAPQIVYTLVI--ATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADFDEAQALRLAAALEQGSSHPLARAILDKA 572          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPA_SALTI (Copper-exporting P-type ATPase A OS=Salmonella typhi GN=copA PE=3 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38
Identity = 88/227 (38.77%), Postives = 135/227 (59.47%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYA 689
            DG +  G++ + E+M+TGE  P  K +G +V  GTV ++G +  +A+ VGS + L++I+R+V  AQ +K  + + AD+IS  FVP+V+ ++  +   W+  G          P+    + L +    +V++IACPCALGLATP +++ G G  A  GVL++   AL+ A  ++ +VFDKTGTLT GKP VV+ K    +       + AA E  S HPLA AI+E A
Sbjct:  357 DGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTVVQDGSILFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVAIALFSAAIWYFFG----------PAPQIVYTLVI--ATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTLTEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLAHAILEKA 571          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATSY_SYNP6 (Probable copper-transporting ATPase synA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=synA PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38
Identity = 98/241 (40.66%), Postives = 134/241 (55.60%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKF------------------HSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAI 677
            DG ++ GQS +  +M+TGE  P   + G  V  GT+N +  L I+A + GS++ LA IVR V  AQ  KAPVQ+FAD I+  FV  V  ++  T+  W   G                    H   E   P S     LAL   ISV+V+ACPCALGLATPTA++V TG+ A QG+L++GG  LE   ++   VFDKTGTLT G+  ++  + L ++      +  AA E +S HPLA A+
Sbjct:  281 DGCIVAGQSTLDTAMLTGEPLPQPCQVGDRVCAGTLNLSHRLVIRAEQTGSQTRLAAIVRCVAEAQQRKAPVQRFADAIAGRFVYGVCAIAALTFGFWATLGSRWWPQVLQQPLPGLLIHAPHHGMEMAHPHSHSPLLLALTLAISVLVVACPCALGLATPTAILVATGLAAEQGILVRGGDVLEQLARIKHFVFDKTGTLTQGQFELIEIQPLADVDPDRLLQWAAALEADSRHPLATAL 521          
The following BLAST results are available for this feature:
BLAST of CN188173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CTPB_MYCTU2.457e-3943.72Cation-transporting P-type ATPase B OS=Mycobacteri... [more]
CTPB_MYCBO2.457e-3943.72Cation-transporting P-type ATPase B OS=Mycobacteri... [more]
COPA_HELFE2.457e-3937.28Copper-transporting ATPase OS=Helicobacter felis G... [more]
CTPA_MYCTU4.190e-3941.78Cation-transporting P-type ATPase A OS=Mycobacteri... [more]
CADA_STAAR4.190e-3937.99Probable cadmium-transporting ATPase OS=Staphyloco... [more]
CADA2_STAAU5.473e-3937.99Probable cadmium-transporting ATPase OS=Staphyloco... [more]
COPA_ECOLI9.335e-3938.33Copper-exporting P-type ATPase A OS=Escherichia co... [more]
COPA_ECO571.219e-3838.33Copper-exporting P-type ATPase A OS=Escherichia co... [more]
COPA_SALTI2.716e-3838.77Copper-exporting P-type ATPase A OS=Salmonella typ... [more]
ATSY_SYNP62.716e-3840.66Probable copper-transporting ATPase synA OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188173 ID=CN188173; Name=CN188173; organism=Citrus sinensis; type=EST; length=694bp
AGTCTTCAGATGGTTACGTTTTGTGGGGACAGAGCCATGTCTATGAGAGT
ATGATAACTGGAGAGGCAAGGCCAGTGGCTAAGAGGAAGGGTTATACAGT
AATTGGTGGCACTGTGAATGAGAATGGGGTGCTACATATTAAGGCAACAA
GGGTTGGATCAGAGAGTGCTCTTGCTCAAATTGTTCGACTTGTTGAATCA
GCTCAGATGGCTAAGGCTCCAGTTCAGAAGTTCGCTGATCGTATTTCAAA
ATACTTTGTGCCTCTGGTCATCATCCTGTCATTTTCGACATGGCTTGCTT
GGTTTTTAGCTGGAAAGTTCCATAGCTACCCGGAATCCTGGATACCATCT
TCGATGGATAGCTTTCAGCTTGCACTACAGTTTGGAATCTCTGTTATGGT
CATAGCGTGTCCATGTGCGCTAGGCCTAGCGACTCCAACTGCTGTAATGG
TTGGAACTGGAGTTGGGGCATCTCAAGGAGTACTGATTAAAGGGGGTCAG
GCCTTGGAAAGTGCACATAAGGTGAATTGCATTGTGTTTGACAAAACTGG
AACTCTGACAGTTGGAAAGCCAGTAGTTGTCAGCACAAAGCTTTTGAAAA
ATATGGTACTGAGAGACTTCTATGAAGTTGTTGCTGCAACTGAGGTTAAC
AGTGAGCACCCATTGGCGAAGGCTATTGTTGAATATGCCAAGAA
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