CN188173

Overview
NameCN188173
Unique NameCN188173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: AHM3_ARATH (Putative cadmium/zinc-transporting ATPase 3 OS=Arabidopsis thaliana GN=HMA2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 85/229 (37.12%), Postives = 130/229 (56.77%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVS-TKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V+ G   V E  +TGEA PV K K  TV  GT+N NG + +  T +  +  +A++ +LVE AQ +K   Q+F D+ SKY+ P +I++S   ++A   A K H+  + W+              + V+V ACPC L L+TP A        A+ G+LIKG   LE+  K+  + FDKTGT+T G+ +V+    L +++ L+     V++TE  S HP+A A+V+YA+
Sbjct:  227 DGVVVDGNCEVDEKTLTGEAFPVPKLKDSTVWAGTINLNGYITVNTTALAEDCVVAKMAKLVEEAQNSKTETQRFIDKCSKYYTPAIILISI-CFVAIPFALKVHNL-KHWV-----------HLALVVLVSACPCGLILSTPVATFCALTKAATSGLLIKGADYLETLAKIKIVAFDKTGTITRGEFIVMDFQSLSEDISLQSLLYWVSSTESKSSHPMAAAVVDYAR 442          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CTPC_MYCLE (Probable cation-transporting P-type ATPase C OS=Mycobacterium leprae GN=ctpC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.822e-34
Identity = 86/225 (38.22%), Postives = 129/225 (57.33%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVS-TKLLKNMVLRDFYEVVAATEVNSEHPLAKAIV 680
            DG V+ G++ V +S ITGE  PV+   G  V  G+V   G L ++A+ VG  + + +IV  VE AQ  +AP+Q   +  S+ FVP   ++S  T                       +    ++  ++V++IACPCA+GLATPTA+    G GA +G+LIKGG  LE A +V+ I+FDKTGTLTVG+PVV +   + K+          A++E++S HPLA+A++
Sbjct:  261 DGEVIDGEAVVNQSAITGENLPVSVMAGSHVHAGSVVVRGRLMVRASAVGKHTTIGRIVTRVEEAQHDRAPIQTVGENFSRCFVPTSFVVSAITL----------------------AITKDVRRTMTVLLIACPCAVGLATPTAISAAIGNGARRGILIKGGSHLEQAGRVDAILFDKTGTLTVGRPVVTNIVAMHKDWSPEQVLAYAASSEIHSRHPLAEAVI 463          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CTPC_MYCTU (Probable cation-transporting P-type ATPase C OS=Mycobacterium tuberculosis GN=ctpC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.379e-34
Identity = 85/225 (37.78%), Postives = 133/225 (59.11%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVS-TKLLKNMVLRDFYEVVAATEVNSEHPLAKAIV 680
            DG V+ G++ V +S ITGE  PV+   G  V  G+V   G + ++A  VG+++ + +I+  VE AQ+ +AP+Q   +  S+ FVP   I+S    +A  + G                    ++  +++++IACPCA+GL+TPTA+    G GA +G+LIKGG  LE A +V+ IVFDKTGTLTVG+PVV +   + K+          A++E++S HPLA+A++
Sbjct:  253 DGEVVDGEAIVNQSAITGENLPVSVVVGTRVHAGSVVVRGRVVVRAHAVGNQTTIGRIISRVEEAQLDRAPIQTVGENFSRRFVPTSFIVSA---IALLITGD-------------------VRRAMTMLLIACPCAVGLSTPTAISAAIGNGARRGILIKGGSHLEQAGRVDAIVFDKTGTLTVGRPVVTNIVAMHKDWEPEQVLAYAASSEIHSRHPLAEAVI 455          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: CTPC_MYCBO (Probable cation-transporting P-type ATPase C OS=Mycobacterium bovis GN=ctpC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.379e-34
Identity = 85/225 (37.78%), Postives = 133/225 (59.11%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVS-TKLLKNMVLRDFYEVVAATEVNSEHPLAKAIV 680
            DG V+ G++ V +S ITGE  PV+   G  V  G+V   G + ++A  VG+++ + +I+  VE AQ+ +AP+Q   +  S+ FVP   I+S    +A  + G                    ++  +++++IACPCA+GL+TPTA+    G GA +G+LIKGG  LE A +V+ IVFDKTGTLTVG+PVV +   + K+          A++E++S HPLA+A++
Sbjct:  253 DGEVVDGEAIVNQSAITGENLPVSVVVGTRVHAGSVVVRGRVVVRAHAVGNQTTIGRIISRVEEAQLDRAPIQTVGENFSRRFVPTSFIVSA---IALLITGD-------------------VRRAMTMLLIACPCAVGLSTPTAISAAIGNGARRGILIKGGSHLEQAGRVDAIVFDKTGTLTVGRPVVTNIVAMHKDWEPEQVLAYAASSEIHSRHPLAEAVI 455          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPB_STAES (Probable copper-transporting P-type ATPase B OS=Staphylococcus epidermidis (strain ATCC 12228) GN=copB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33
Identity = 80/230 (34.78%), Postives = 133/230 (57.83%), Query Frame = 3
Query:    6 SDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRD-FYEVVAATEVNSEHPLAKAIVEYAK 692
            +DG ++ GQ+ + ES++TGE++ V K +   VIGG++N +G + +K T VG +  L+Q++ LV  AQ  K+  +  +D+++ Y     +I+   +++ W L           I + +D    AL+  ++V+VIACP ALGLA P      T +GA  G++IK  +++E A  ++ ++ DKTGTLT G   V   +  KN +  D    + A+ E  S HPLA +IV++AK
Sbjct:  203 TDGIIVQGQTSIDESLVTGESKKVQKNQNDNVIGGSINGSGTIQVKVTAVGEDGYLSQVMGLVNQAQNDKSSAELLSDKVAGYLFYFAVIVGVISFIVWML-----------IQNDVD---FALERLVTVLVIACPHALGLAIPLVTARSTSIGAHNGLIIKNRESVEIAQHIDYVMMDKTGTLTEGNFSVNHYESFKNDLSNDTILSLFASLESQSNHPLAISIVDFAK 418          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPB_STAHJ (Probable copper-transporting P-type ATPase B OS=Staphylococcus haemolyticus (strain JCSC1435) GN=copB PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 80/230 (34.78%), Postives = 132/230 (57.39%), Query Frame = 3
Query:    6 SDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRD-FYEVVAATEVNSEHPLAKAIVEYAK 692
            +DG ++ GQ+ V ES++TGE++ V K +   VIGG++N +G + +K T VG +  L+Q++ LV  AQ  K+  +  +D+++ Y     +I+   +++ W L           I + +D    AL+  ++V+VIACP ALGLA P      T +GA  G++IK  +++E A  ++ ++ DKTGTLT G   V   +  KN +  D    + A+ E  S HPLA +IV++ K
Sbjct:  203 TDGIIVQGQTSVDESLVTGESKKVQKNQNDNVIGGSINGSGTIQVKVTAVGEDGYLSQVMGLVNQAQNDKSSAELLSDKVAGYLFYFAVIVGVISFIVWML-----------IQNDVD---FALERLVTVLVIACPHALGLAIPLVTARSTSIGAHNGLIIKNRESVEIAQHIDYVMMDKTGTLTEGNFSVNHYESFKNDLSNDTILSLFASLESQSNHPLAISIVDFTK 418          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPB_STAEQ (Probable copper-transporting P-type ATPase B OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=copB PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.861e-33
Identity = 79/230 (34.35%), Postives = 132/230 (57.39%), Query Frame = 3
Query:    6 SDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRD-FYEVVAATEVNSEHPLAKAIVEYAK 692
            +DG ++ GQ+ + ES++TGE++ V K +   VIGG++N +G + +K T VG +  L+Q++ LV  AQ  K+  +  +D+++ Y     + +   +++ W L           I + +D    AL+  ++V+VIACP ALGLA P      T +GA  G++IK  +++E A  ++ ++ DKTGTLT G   V   +  KN +  D    + A+ E  S HPLA +IV++AK
Sbjct:  203 TDGIIVQGQTSIDESLVTGESKKVQKNQNDNVIGGSINGSGTIQVKVTAVGEDGYLSQVMGLVNQAQNDKSSAELLSDKVAGYLFYFAVSVGVISFIVWML-----------IQNDVD---FALERLVTVLVIACPHALGLAIPLVTARSTSIGAHNGLIIKNRESVEIAQHIDYVMMDKTGTLTEGNFSVNHYESFKNDLSNDTILSLFASLESQSNHPLAISIVDFAK 418          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPB_STAAT (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=copB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.861e-33
Identity = 79/230 (34.35%), Postives = 132/230 (57.39%), Query Frame = 3
Query:    6 SDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRD-FYEVVAATEVNSEHPLAKAIVEYAK 692
            +DG ++ GQ+ + ES++TGE++ V K +   VIGG++N +G + +K T VG +  L+Q++ LV  AQ  K+  +  +D+++ Y     + +   +++ W L           I + +D    AL+  ++V+VIACP ALGLA P      T +GA  G++IK  +++E A  ++ ++ DKTGTLT G   V   +  KN +  D    + A+ E  S HPLA +IV++AK
Sbjct:  203 TDGIIVQGQTSIDESLVTGESKKVQKNQNDNVIGGSINGSGTIQVKVTAVGEDGYLSQVMGLVNQAQNDKSSAELLSDKVAGYLFYFAVSVGVISFIVWML-----------IQNDVD---FALERLVTVLVIACPHALGLAIPLVTARSTSIGAHNGLIIKNRESVEIAQHIDYVMMDKTGTLTEGNFSVNHYESFKNDLSNDTILSLFASLESQSNHPLAISIVDFAK 418          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: COPB_STAA3 (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain USA300) GN=copB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.861e-33
Identity = 79/230 (34.35%), Postives = 132/230 (57.39%), Query Frame = 3
Query:    6 SDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRD-FYEVVAATEVNSEHPLAKAIVEYAK 692
            +DG ++ GQ+ + ES++TGE++ V K +   VIGG++N +G + +K T VG +  L+Q++ LV  AQ  K+  +  +D+++ Y     + +   +++ W L           I + +D    AL+  ++V+VIACP ALGLA P      T +GA  G++IK  +++E A  ++ ++ DKTGTLT G   V   +  KN +  D    + A+ E  S HPLA +IV++AK
Sbjct:  203 TDGIIVQGQTSIDESLVTGESKKVQKNQNDNVIGGSINGSGTIQVKVTAVGEDGYLSQVMGLVNQAQNDKSSAELLSDKVAGYLFYFAVSVGVISFIVWML-----------IQNDVD---FALERLVTVLVIACPHALGLAIPLVTARSTSIGAHNGLIIKNRESVEIAQHIDYVMMDKTGTLTEGNFSVNHYESFKNDLSNDTILSLFASLESQSNHPLAISIVDFAK 418          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: AHM2_ARATH (Putative cadmium/zinc-transporting ATPase 2 OS=Arabidopsis thaliana GN=HMA4 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 84/229 (36.68%), Postives = 128/229 (55.90%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTK-LLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V+ G   V E  +TGEA PV K++  TV  GT+N NG + +K T +  +  +A++ +LVE AQ +K   Q+  D+ S+Y+ P +I++S    +   +  K H+  + W       F LAL     V+V  CPC L L+TP A        A+ G+LIK    L++  K+  + FDKTGT+T G+ +V+  K L +++ LR     V++ E  S HP+A  IV+YAK
Sbjct:  237 DGIVVDGNCEVDEKTLTGEAFPVPKQRDSTVWAGTINLNGYICVKTTSLAGDCVVAKMAKLVEEAQSSKTKSQRLIDKCSQYYTPAIILVSACVAIVPVIM-KVHNL-KHW-------FHLAL----VVLVSGCPCGLILSTPVATFCALTKAATSGLLIKSADYLDTLSKIKIVAFDKTGTITRGEFIVIDFKSLSRDINLRSLLYWVSSVESKSSHPMAATIVDYAK 452          
The following BLAST results are available for this feature:
BLAST of CN188173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
AHM3_ARATH1.068e-3437.12Putative cadmium/zinc-transporting ATPase 3 OS=Ara... [more]
CTPC_MYCLE1.822e-3438.22Probable cation-transporting P-type ATPase C OS=My... [more]
CTPC_MYCTU2.379e-3437.78Probable cation-transporting P-type ATPase C OS=My... [more]
CTPC_MYCBO2.379e-3437.78Probable cation-transporting P-type ATPase C OS=My... [more]
COPB_STAES1.181e-3334.78Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAHJ2.631e-3334.78Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAEQ5.861e-3334.35Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAAT5.861e-3334.35Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAA35.861e-3334.35Probable copper-transporting P-type ATPase B OS=St... [more]
AHM2_ARATH1.705e-3236.68Putative cadmium/zinc-transporting ATPase 2 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188173 ID=CN188173; Name=CN188173; organism=Citrus sinensis; type=EST; length=694bp
AGTCTTCAGATGGTTACGTTTTGTGGGGACAGAGCCATGTCTATGAGAGT
ATGATAACTGGAGAGGCAAGGCCAGTGGCTAAGAGGAAGGGTTATACAGT
AATTGGTGGCACTGTGAATGAGAATGGGGTGCTACATATTAAGGCAACAA
GGGTTGGATCAGAGAGTGCTCTTGCTCAAATTGTTCGACTTGTTGAATCA
GCTCAGATGGCTAAGGCTCCAGTTCAGAAGTTCGCTGATCGTATTTCAAA
ATACTTTGTGCCTCTGGTCATCATCCTGTCATTTTCGACATGGCTTGCTT
GGTTTTTAGCTGGAAAGTTCCATAGCTACCCGGAATCCTGGATACCATCT
TCGATGGATAGCTTTCAGCTTGCACTACAGTTTGGAATCTCTGTTATGGT
CATAGCGTGTCCATGTGCGCTAGGCCTAGCGACTCCAACTGCTGTAATGG
TTGGAACTGGAGTTGGGGCATCTCAAGGAGTACTGATTAAAGGGGGTCAG
GCCTTGGAAAGTGCACATAAGGTGAATTGCATTGTGTTTGACAAAACTGG
AACTCTGACAGTTGGAAAGCCAGTAGTTGTCAGCACAAAGCTTTTGAAAA
ATATGGTACTGAGAGACTTCTATGAAGTTGTTGCTGCAACTGAGGTTAAC
AGTGAGCACCCATTGGCGAAGGCTATTGTTGAATATGCCAAGAA
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