CN188172

Overview
NameCN188172
Unique NameCN188172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2734 contig Csv1_Contig2734:11..599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATCS_SYNE7 (Cation-transporting ATPase pacS OS=Synechococcus elongatus (strain PCC 7942) GN=pacS PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.192e-20
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+AIG GTD+AI A+DI L+  +L+ ++TAI LSR T + IR N  +A  YN+ GIPIAAG L+P  G+ L P +AGAAMA
Sbjct:  642 LAQADVGIAIGTGTDVAIAASDITLISGDLQGIVTAIQLSRATMTNIRQNLFFAFIYNVAGIPIAAGILYPLLGWLLSPMLAGAAMA 728          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATP7B_RAT (Copper-transporting ATPase 2 OS=Rattus norvegicus GN=Atp7b PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.702e-19
Identity = 47/88 (53.41%), Postives = 66/88 (75.00%), Query Frame = -1
Query:  325 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAA 588
            L  ADVG+AIG GTD+AI+AAD+VL++++L DV+ +I LS++T  RIR+N + AL YN++GIPIAAG   P  G  L PW+  AA ++
Sbjct: 1263 LAQADVGIAIGTGTDVAIDAADVVLIRNDLLDVVASIHLSKRTVRRIRVNLVLALIYNMVGIPIAAGVFMP-IGIVLQPWMGSAAASS 1349          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATCU2_RHIME (Copper-transporting ATPase 2 OS=Rhizobium meliloti GN=actP2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.609e-19
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+A+G GTDIAIE+AD+VLM  +L  V  AI LS+ T   I+ N  WA  YN+  IP+AAG L+P TG  L P  A AAMA
Sbjct:  722 LAEADVGIAVGTGTDIAIESADVVLMSGDLNGVAKAIALSKATILNIKQNLFWAFAYNVSLIPVAAGVLYPVTGILLSPIFAAAAMA 808          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_BACSU (Copper-exporting P-type ATPase A OS=Bacillus subtilis GN=copA PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.019e-19
Identity = 51/87 (58.62%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  AD+GMAIG GTDIA+E ADI L++ +L  +  AI +SR T   I+ N  WALGYN LGIPIAA       GF L PWIAGAAMA
Sbjct:  706 LATADIGMAIGTGTDIAMETADITLIRGDLNSIADAIRMSRLTMKNIKQNLFWALGYNSLGIPIAA------LGF-LAPWIAGAAMA 785          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATCS_SYNY3 (Cation-transporting ATPase pacS OS=Synechocystis sp. (strain PCC 6803) GN=pacS PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.019e-19
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+AIG GTD+AI A+DI L+  +L+ ++TAI LSR T   IR N  +A  YN++GIP+AAG  +P  G  L P +AGAAMA
Sbjct:  641 LAQADVGIAIGTGTDVAIAASDITLIAGDLQGILTAIKLSRATMGNIRQNLFFAFIYNVIGIPVAAGLFYPLFGLLLNPILAGAAMA 727          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_ARCFU (Probable copper-exporting P-type ATPase B OS=Archaeoglobus fulgidus GN=copB PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.095e-18
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+AIGAGTD+A+E ADIVL++++  DV   ++LSRKT+S+++ N +WA GYN   IP+AAG L+ + G  L P +    M+
Sbjct:  591 LAQADVGIAIGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKMKQNLLWATGYNAFAIPLAAGVLY-SAGILLSPAVGAILMS 676          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_YERPE (Copper-exporting P-type ATPase A OS=Yersinia pestis GN=copA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.095e-18
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+A+G G+DIAIE A I LM+ +L  V+ A++LS+ T   ++ N + A  YN LGIPIAAG L+P TG  L P +AGAAMA
Sbjct:  855 LAQADVGIAMGGGSDIAIETAAITLMRHSLYGVVDAVELSKATLRNMKQNLLGAFFYNALGIPIAAGILYPFTGTLLSPVVAGAAMA 941          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_VIBCH (Copper-exporting P-type ATPase A OS=Vibrio cholerae GN=copA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.691e-18
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  AD+G+A+G+G+D+AIE+A + L+ S+   V++AI+LS+ T   ++ N   A  YN LGIPIAAG L+P  GF L P +AGAAMA
Sbjct:  804 LALADIGIAMGSGSDVAIESAQMTLLNSSPTSVVSAIELSKATLRNMKQNLFGAFIYNTLGIPIAAGVLYPAFGFLLSPVVAGAAMA 890          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATCU_SINMW (Copper-transporting P-type ATPase OS=Sinorhizobium medicae (strain WSM419) GN=actP PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.691e-18
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+A+G GTDIAIE+AD+VLM  +L  V  A+ LS+ T   I+ N  WA  YN+  +P+AAG L+P  G  L P  A AAMA
Sbjct:  722 LAEADVGIAVGTGTDIAIESADVVLMSGDLNGVAKALALSKATIRNIKQNLFWAFVYNISLVPVAAGVLYPVNGTLLSPIFAAAAMA 808          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATCU1_RHIME (Copper-transporting ATPase 1 OS=Rhizobium meliloti GN=actP1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.691e-18
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+A+G GTDIAIE+AD+VLM  +L  V  AI LS+ T   I+ N  WA  YN+  +P+AAG L+P  G  L P +A AAMA
Sbjct:  721 LTEADVGIAVGTGTDIAIESADVVLMSGDLIGVPKAIALSKATIRNIKQNLFWAFAYNVSLVPVAAGVLYPLNGTLLSPILAAAAMA 807          
The following BLAST results are available for this feature:
BLAST of CN188172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
ATCS_SYNE73.192e-2056.32Cation-transporting ATPase pacS OS=Synechococcus e... [more]
ATP7B_RAT2.702e-1953.41Copper-transporting ATPase 2 OS=Rattus norvegicus ... [more]
ATCU2_RHIME4.609e-1955.17Copper-transporting ATPase 2 OS=Rhizobium meliloti... [more]
COPA_BACSU6.019e-1958.62Copper-exporting P-type ATPase A OS=Bacillus subti... [more]
ATCS_SYNY36.019e-1954.02Cation-transporting ATPase pacS OS=Synechocystis s... [more]
COPB_ARCFU5.095e-1849.43Probable copper-exporting P-type ATPase B OS=Archa... [more]
COPA_YERPE5.095e-1854.02Copper-exporting P-type ATPase A OS=Yersinia pesti... [more]
COPA_VIBCH8.691e-1850.57Copper-exporting P-type ATPase A OS=Vibrio cholera... [more]
ATCU_SINMW8.691e-1851.72Copper-transporting P-type ATPase OS=Sinorhizobium... [more]
ATCU1_RHIME8.691e-1852.87Copper-transporting ATPase 1 OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188172 ID=CN188172; Name=CN188172; organism=Citrus sinensis; type=EST; length=588bp
TTTTACTATTTTTCCCTTATGGGATAATCTCATTTTCTTTCAAATTTCCA
TTTTCAAGGGTACACTTTGAGAGACAATTTCTCATTCACCCAAGCACCAT
TTTGAGTAAATAAATATACATTTTCGAAGTATTCACGGAGTAGAACCCGA
ACTTCACAATATTTCCCACTTTCGCTAAGTGGGACCCACTCAAAATGTGC
CCTCAAAATAACATATTGATTTGCTATTTTTCCAACAAATTTCACGAATC
TCAAGATTATTCAGCTTCTTAGGCCTCTTGTAATTCTTCAGCAACAGAGA
GCAGCAAACAACACTAACTGAAGAGGCTGCCATTGCAGCTCCAGCAATCC
ATGGAGGTAAACGGAATCCAGTAGTCGGGAAAAGGGCTCCCGCAGCAATT
GGTATGCCTAAAAGGTTATAACCCAGAGCCCAAATGTAGTTCAGACGAAT
ACGCGAAAAAGTTTTCCTCGACAAGTCTATAGCAGTTATCACATCCTCCA
AATTACTCTTCATCAGGACAATATCAGCTGCCTCTATTGCAATGTCCGTG
CCTGCACCAATTGCCATTCCAACATCTGCTGCTACAAG
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