CN188172

Overview
NameCN188172
Unique NameCN188172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2734 contig Csv1_Contig2734:11..599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: CTPB_MYCTU (Cation-transporting P-type ATPase B OS=Mycobacterium tuberculosis GN=ctpB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GTD+A+ AADI+L++ +L  V  A+DL+R T   IR+N IWA GYN+  IPIAA  L       L P IAGAAMA
Sbjct:  654 LVGADLGLAIGRGTDVALGAADIILVRDDLNTVPQALDLARATMRTIRMNMIWAFGYNVAAIPIAAAGL-------LNPLIAGAAMA 733          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: CTPB_MYCBO (Cation-transporting P-type ATPase B OS=Mycobacterium bovis GN=ctpB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GTD+A+ AADI+L++ +L  V  A+DL+R T   IR+N IWA GYN+  IPIAA  L       L P IAGAAMA
Sbjct:  654 LVGADLGLAIGRGTDVALGAADIILVRDDLNTVPQALDLARATMRTIRMNMIWAFGYNVAAIPIAAAGL-------LNPLIAGAAMA 733          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATU2_YEAST (Copper-transporting ATPase OS=Saccharomyces cerevisiae GN=CCC2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.483e-17
Identity = 50/93 (53.76%), Postives = 61/93 (65.59%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSN------LEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  +D+G+AI  GT+IAIEAADIV++  N      L  +  AID+S KTF RI+LN  WAL YN+  IPIA G L P  G  LPP +AG AMA
Sbjct:  846 LALSDLGIAISTGTEIAIEAADIVILCGNDLNTNSLRGLANAIDISLKTFKRIKLNLFWALCYNIFMIPIAMGVLIP-WGITLPPMLAGLAMA 937          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: CTPA_MYCTU (Cation-transporting P-type ATPase A OS=Mycobacterium tuberculosis GN=ctpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.303e-17
Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  AD+GMAIG GTD+AI AADI+L++ +L+ V  A+DL+R T   ++LN +WA GYN+  IP+AA  L       L P +AGAAMA
Sbjct:  645 LARADLGMAIGRGTDVAIGAADIILVRDHLDVVPLALDLARATMRTVKLNMVWAFGYNIAAIPVAAAGL-------LNPLVAGAAMA 724          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAHJ (Copper-exporting P-type ATPase A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=copA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.634e-17
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+A+G GT++AIEAADI ++  +++ V  AI  S KT   I+ N  WA GYN+ GIPIAA  L       L PWIAGAAMA
Sbjct:  698 LVKADIGIAMGTGTEVAIEAADITILGGDIQLVPKAIHASHKTIRNIKQNLFWAFGYNIAGIPIAAMGL-------LAPWIAGAAMA 777          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAES (Copper-exporting P-type ATPase A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=copA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.609e-17
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+GMAIG G ++AIEAADI ++  +L  V  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PWIAGAAMA
Sbjct:  697 LVKADIGMAIGTGAEVAIEAADITILGGDLLLVPKAIKASKATIKNIRQNLFWAFGYNVAGIPIAACGL-------LAPWIAGAAMA 776          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAEQ (Copper-exporting P-type ATPase A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=copA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.609e-17
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+GMAIG G ++AIEAADI ++  +L  V  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PWIAGAAMA
Sbjct:  697 LVKADIGMAIGTGAEVAIEAADITILGGDLLLVPKAIKASKATIKNIRQNLFWAFGYNVAGIPIAACGL-------LAPWIAGAAMA 776          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATCU_RHILV (Copper-transporting P-type ATPase OS=Rhizobium leguminosarum bv. viciae GN=actP PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.609e-17
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L AADVG+A+G G D+A+E+A I L+K +L  ++ A  L+  T   IR N  +A GYN LG+P+AAG L+P  G  L P IA AAM+
Sbjct:  737 LAAADVGIAMGTGADVAMESAGITLVKGDLTGIVRARRLAEATMRNIRQNLGFAFGYNALGVPVAAGVLYPILGLLLSPMIAAAAMS 823          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: CTPA_MYCLE (Cation-transporting P-type ATPase A OS=Mycobacterium leprae GN=ctpA PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  AD+GMAIG GTD+AI AADI+L++ NL+ V   +DL+  T   I+ N +WA GYN+  IPIAA  L       L P +AGAAMA
Sbjct:  632 LARADLGMAIGRGTDVAIGAADIILVRDNLDVVPITLDLAAATMRTIKFNMVWAFGYNIAAIPIAAAGL-------LNPLVAGAAMA 711          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAS1 (Copper-exporting P-type ATPase A OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAAD+ ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PWIAGAAMA
Sbjct:  697 LVQADIGIAIGTGTEVAIEAADVTILGGDLLLIPKAIKASKATIRNIRQNLFWAFGYNVAGIPIAALGL-------LAPWIAGAAMA 776          
The following BLAST results are available for this feature:
BLAST of CN188172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CTPB_MYCTU1.135e-1755.17Cation-transporting P-type ATPase B OS=Mycobacteri... [more]
CTPB_MYCBO1.135e-1755.17Cation-transporting P-type ATPase B OS=Mycobacteri... [more]
ATU2_YEAST1.483e-1753.76Copper-transporting ATPase OS=Saccharomyces cerevi... [more]
CTPA_MYCTU3.303e-1751.72Cation-transporting P-type ATPase A OS=Mycobacteri... [more]
COPA_STAHJ5.634e-1752.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAES9.609e-1755.17Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAEQ9.609e-1755.17Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
ATCU_RHILV9.609e-1749.43Copper-transporting P-type ATPase OS=Rhizobium leg... [more]
CTPA_MYCLE2.141e-1651.72Cation-transporting P-type ATPase A OS=Mycobacteri... [more]
COPA_STAS12.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188172 ID=CN188172; Name=CN188172; organism=Citrus sinensis; type=EST; length=588bp
TTTTACTATTTTTCCCTTATGGGATAATCTCATTTTCTTTCAAATTTCCA
TTTTCAAGGGTACACTTTGAGAGACAATTTCTCATTCACCCAAGCACCAT
TTTGAGTAAATAAATATACATTTTCGAAGTATTCACGGAGTAGAACCCGA
ACTTCACAATATTTCCCACTTTCGCTAAGTGGGACCCACTCAAAATGTGC
CCTCAAAATAACATATTGATTTGCTATTTTTCCAACAAATTTCACGAATC
TCAAGATTATTCAGCTTCTTAGGCCTCTTGTAATTCTTCAGCAACAGAGA
GCAGCAAACAACACTAACTGAAGAGGCTGCCATTGCAGCTCCAGCAATCC
ATGGAGGTAAACGGAATCCAGTAGTCGGGAAAAGGGCTCCCGCAGCAATT
GGTATGCCTAAAAGGTTATAACCCAGAGCCCAAATGTAGTTCAGACGAAT
ACGCGAAAAAGTTTTCCTCGACAAGTCTATAGCAGTTATCACATCCTCCA
AATTACTCTTCATCAGGACAATATCAGCTGCCTCTATTGCAATGTCCGTG
CCTGCACCAATTGCCATTCCAACATCTGCTGCTACAAG
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